Variant report
Variant | rs6013940 |
---|---|
Chromosome Location | chr20:52865091-52865092 |
allele | C/T |
Outlinks | Ensembl   UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:5)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
No data |
No data |
(count:5 , 50 per page) page:
1
No. | Distal block | Cell Line | Cell type | Cell Stage |
---|---|---|---|---|
1 | chr20:52823769..52826753-chr20:52862832..52866442,3 | MCF-7 | breast: | |
2 | chr20:52863453..52865968-chr20:52924698..52926232,2 | MCF-7 | breast: | |
3 | chr20:52834806..52836428-chr20:52863803..52865518,2 | MCF-7 | breast: | |
4 | chr20:52864263..52865094-chr20:52885677..52886537,2 | MCF-7 | breast: | |
5 | chr20:52864152..52866358-chr20:52903811..52906264,2 | MCF-7 | breast: |
No data |
No data |
No data |
Variant related genes | Relation type |
---|---|
ENSG00000101132 | Chromatin interaction |
rs_ID | r2[population] |
---|---|
rs6023066 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
rs6023067 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
rs6023077 | 1.00[AFR][1000 genomes];0.81[AMR][1000 genomes] |
rs73137422 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
rs73137426 | 1.00[AFR][1000 genomes];0.81[AMR][1000 genomes] |
rs73137427 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
rs73137428 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
rs73137430 | 0.98[AFR][1000 genomes];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes] |
rs73137431 | 1.00[AFR][1000 genomes];0.81[AMR][1000 genomes] |
rs73137432 | 0.95[AFR][1000 genomes];0.81[AMR][1000 genomes] |
rs73137433 | 1.00[AFR][1000 genomes];0.81[AMR][1000 genomes] |
rs73137434 | 1.00[AFR][1000 genomes];0.81[AMR][1000 genomes] |
rs73137435 | 1.00[AFR][1000 genomes];0.81[AMR][1000 genomes] |

No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
---|---|---|---|---|---|---|---|
1 | nsv586224 | chr20:52474850-53279490 | Flanking Active TSS Weak transcription Enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Active TSS Bivalent/Poised TSS Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNAmiRNA target site | 338 gene(s) | inside rSNPs | diseases |
2 | nsv834010 | chr20:52759824-52932939 | Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 119 gene(s) | inside rSNPs | diseases |
3 | nsv834011 | chr20:52858341-53086042 | Enhancers ZNF genes & repeats Weak transcription Bivalent Enhancer Flanking Active TSS Active TSS | Chromatin interactive regionlncRNA | 55 gene(s) | inside rSNPs | diseases |
No data |