Variant report

No.	Distal block	Cell Line	Cell type
1	chr20:53024747..53028563-chr20:53034818..53037384,3	MCF-7	breast:
2	chr20:53029177..53030712-chr20:53035753..53037275,2	MCF-7	breast:
3	chr20:52879517..52881531-chr20:53035271..53037690,2	MCF-7	breast:
4	chr20:52824352..52826169-chr20:53035034..53037506,2	MCF-7	breast:
5	chr15:87443577..87445458-chr20:53034943..53037024,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000101132	Chromatin interaction

rSNPs within LD-proxies of this variant (count:21)

rs_ID	r²[population]
rs1007393	0.90[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs1321464	0.89[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1321465	0.97[AFR][1000 genomes];0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1321468	0.89[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1358806	0.84[ASN][1000 genomes]
rs1358807	0.84[ASN][1000 genomes]
rs1590206	0.85[ASN][1000 genomes]
rs16999597	0.81[AMR][1000 genomes]
rs2870329	0.84[ASN][1000 genomes]
rs35464585	0.81[ASN][1000 genomes]
rs6014004	0.84[AMR][1000 genomes]
rs6014011	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6023183	0.82[ASN][1000 genomes]
rs6023189	0.81[AMR][1000 genomes]
rs6023197	0.82[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs6023227	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs6097955	0.81[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs6097957	0.84[ASN][1000 genomes]
rs6097964	0.85[ASN][1000 genomes]
rs6097967	0.85[ASN][1000 genomes]
rs73147267	0.85[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv586224	chr20:52474850-53279490	Flanking Active TSS Weak transcription Enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Active TSS Bivalent/Poised TSS Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	338 gene(s)	inside rSNPs	diseases
2	nsv834011	chr20:52858341-53086042	Enhancers ZNF genes & repeats Weak transcription Bivalent Enhancer Flanking Active TSS Active TSS	Chromatin interactive region lncRNA	55 gene(s)	inside rSNPs	diseases
3	nsv834012	chr20:52921007-53097177	Flanking Active TSS Weak transcription Bivalent/Poised TSS Enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	43 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr20:53035000-53036000	Enhancers	Breast Myoepithelial Primary Cells	Breast

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