Variant report
| Variant | rs60142040 |
|---|---|
| Chromosome Location | chr14:85413893-85413894 |
| allele | C/G |
| Outlinks | Ensembl UCSC |
- TF binding region (count:1)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
(count:1 , 50 per page) page:
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| No. | Transcrition factor | Chromosome Location | Cell Line | Cell type | Cell Stage | Matched TF binding sites |
|---|---|---|---|---|---|---|
| 1 | ZNF263 | chr14:85413525-85413932 | HEK293-T-REx | kidney: | n/a | n/a |
| No data |
| No data |
| No data |
| No data |
| No data |
| Variant related genes | Relation type |
|---|---|
| ENSG00000258506 | TF binding region |
rSNPs within LD-proxies of this variant (count:13)
| rs_ID | r2[population] |
|---|---|
| rs55834481 | 0.83[AFR][1000 genomes] |
| rs55916506 | 0.96[AFR][1000 genomes];0.92[EUR][1000 genomes] |
| rs57344163 | 0.96[AFR][1000 genomes];0.92[EUR][1000 genomes] |
| rs60224935 | 0.90[AFR][1000 genomes];0.92[EUR][1000 genomes] |
| rs60467246 | 0.96[AFR][1000 genomes];0.92[EUR][1000 genomes] |
| rs709879 | 0.85[EUR][1000 genomes] |
| rs709880 | 0.85[EUR][1000 genomes] |
| rs7147519 | 0.92[EUR][1000 genomes] |
| rs7147908 | 0.81[AFR][1000 genomes] |
| rs73312938 | 0.96[AFR][1000 genomes];0.92[EUR][1000 genomes] |
| rs73312951 | 0.88[AFR][1000 genomes];0.84[EUR][1000 genomes] |
| rs73314803 | 0.90[AFR][1000 genomes] |
| rs74068038 | 0.83[AFR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page:
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| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | esv2751288 | chr14:84815330-85704047 | Enhancers Flanking Active TSS Weak transcription Bivalent/Poised TSS Active TSS ZNF genes & repeats Strong transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer Genic enhancers | TF binding regionCpG islandChromatin interactive regionlncRNA | 6 gene(s) | inside rSNPs | diseases |
| 2 | nsv1048026 | chr14:85330544-85686322 | Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Active TSS Strong transcription | TF binding regionCpG islandChromatin interactive regionlncRNA | 4 gene(s) | inside rSNPs | diseases |
| 3 | esv3401331 | chr14:85332747-85716351 | Enhancers Flanking Active TSS Active TSS Weak transcription ZNF genes & repeats Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh | TF binding regionCpG islandChromatin interactive regionlncRNA | 5 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr14:85413800-85414000 | Enhancers | Pancreas | Pancrea |
