Variant report

Variant	rs60145717
Chromosome Location	chr6:5640572-5640573
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 28 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:26)

rs_ID	r²[population]
rs17141072	1.00[EUR][1000 genomes]
rs55834752	1.00[EUR][1000 genomes]
rs56034806	0.83[EUR][1000 genomes]
rs56151297	1.00[EUR][1000 genomes]
rs57249351	0.83[EUR][1000 genomes]
rs57529114	0.83[EUR][1000 genomes]
rs58293818	1.00[EUR][1000 genomes]
rs58726761	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs58797340	0.83[EUR][1000 genomes]
rs59147825	1.00[EUR][1000 genomes]
rs60880092	1.00[EUR][1000 genomes]
rs61089791	1.00[EUR][1000 genomes]
rs61324636	1.00[EUR][1000 genomes]
rs73360276	1.00[EUR][1000 genomes]
rs73360301	1.00[EUR][1000 genomes]
rs73360302	1.00[EUR][1000 genomes]
rs73718324	0.83[EUR][1000 genomes]
rs73718325	0.83[EUR][1000 genomes]
rs73718327	0.83[EUR][1000 genomes]
rs73718330	0.83[EUR][1000 genomes]
rs73718333	1.00[EUR][1000 genomes]
rs73718334	1.00[EUR][1000 genomes]
rs73718335	0.83[EUR][1000 genomes]
rs73718336	1.00[EUR][1000 genomes]
rs7741315	1.00[EUR][1000 genomes]
rs7776055	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv916361	chr6:5315853-5695486	Weak transcription Enhancers Active TSS Strong transcription ZNF genes & repeats Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
2	nsv600887	chr6:5545046-5694713	ZNF genes & repeats Enhancers Weak transcription Flanking Active TSS Strong transcription Genic enhancers Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:33 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:5610600-5641000	Weak transcription	Stomach Smooth Muscle	stomach
2	chr6:5627800-5640800	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
3	chr6:5629200-5645600	Weak transcription	Right Ventricle	heart
4	chr6:5635000-5645000	Weak transcription	Skeletal Muscle Female	skeletal muscle
5	chr6:5635200-5644800	Weak transcription	Left Ventricle	heart
6	chr6:5635400-5654000	Weak transcription	Right Atrium	heart
7	chr6:5636800-5642800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
8	chr6:5639200-5640600	Weak transcription	Fetal Muscle Trunk	muscle
9	chr6:5639400-5644800	Weak transcription	Fetal Heart	heart
10	chr6:5639600-5641000	ZNF genes & repeats	HUES6 Cell Line	embryonic stem cell
11	chr6:5639800-5641200	ZNF genes & repeats	Primary T regulatory cells fromperipheralblood	blood
12	chr6:5639800-5641400	ZNF genes & repeats	Aorta	Aorta
13	chr6:5639800-5641400	ZNF genes & repeats	Fetal Intestine Small	intestine
14	chr6:5640000-5640600	ZNF genes & repeats	Duodenum Mucosa	Duodenum
15	chr6:5640000-5641000	ZNF genes & repeats	H1 Cell Line	embryonic stem cell
16	chr6:5640000-5641000	ZNF genes & repeats	Fetal Stomach	stomach
17	chr6:5640000-5641400	ZNF genes & repeats	Primary T cells from cord blood	blood
18	chr6:5640000-5641400	ZNF genes & repeats	Primary hematopoietic stem cells short term culture	blood
19	chr6:5640000-5641400	ZNF genes & repeats	Ganglion Eminence derived primary cultured neurospheres	brain
20	chr6:5640200-5641000	ZNF genes & repeats	Pancreas	Pancrea
21	chr6:5640200-5641200	ZNF genes & repeats	Primary T killer memory cells from peripheral blood	blood
22	chr6:5640200-5641200	ZNF genes & repeats	Dnd41	blood
23	chr6:5640200-5641600	ZNF genes & repeats	Primary hematopoietic stem cells G-CSF-mobilized Male	--
24	chr6:5640400-5640600	ZNF genes & repeats	Gastric	stomach
25	chr6:5640400-5640600	ZNF genes & repeats	Sigmoid Colon	Sigmoid Colon
26	chr6:5640400-5640600	ZNF genes & repeats	Spleen	Spleen
27	chr6:5640400-5641000	ZNF genes & repeats	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
28	chr6:5640400-5641000	ZNF genes & repeats	Primary T helper naive cells from peripheral blood	blood
29	chr6:5640400-5641200	ZNF genes & repeats	Primary T cells fromperipheralblood	blood
30	chr6:5640400-5641400	ZNF genes & repeats	Breast Myoepithelial Primary Cells	Breast
31	chr6:5640400-5641400	ZNF genes & repeats	Primary T helper memory cells from peripheral blood 1	blood
32	chr6:5640400-5641400	ZNF genes & repeats	Esophagus	oesophagus
33	chr6:5640400-5642000	ZNF genes & repeats	ES-UCSF4 Cell Line	embryonic stem cell

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