Variant report

Variant	rs60150394
Chromosome Location	chr9:7922402-7922403
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 23 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs10815714	0.99[ASN][1000 genomes]
rs10976659	0.92[ASN][1000 genomes]
rs10976677	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs10976680	1.00[EUR][1000 genomes]
rs13287774	0.81[ASN][1000 genomes]
rs16926872	0.99[ASN][1000 genomes]
rs17228450	0.99[ASN][1000 genomes]
rs55694364	0.99[ASN][1000 genomes]
rs55750821	0.92[ASN][1000 genomes]
rs56254044	1.00[EUR][1000 genomes]
rs56379136	1.00[ASN][1000 genomes]
rs72701817	0.99[ASN][1000 genomes]
rs72701821	0.99[ASN][1000 genomes]
rs72701832	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:9 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1033077	chr9:7358832-7990735	Weak transcription Enhancers Active TSS Strong transcription Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases
2	nsv539977	chr9:7358832-7990735	Weak transcription Enhancers Flanking Active TSS Strong transcription Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases
3	nsv995116	chr9:7682729-8065192	Strong transcription Enhancers Weak transcription Genic enhancers Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases
4	nsv8414	chr9:7827373-8511613	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Strong transcription Genic enhancers Active TSS Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases
5	nsv973468	chr9:7871815-7950706	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Active TSS	TF binding region Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
6	nsv1024456	chr9:7887727-8157591	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS ZNF genes & repeats Bivalent/Poised TSS	TF binding region Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
7	nsv539979	chr9:7887727-8157591	Flanking Active TSS Enhancers Bivalent Enhancer Weak transcription Active TSS Bivalent/Poised TSS ZNF genes & repeats	TF binding region Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
8	nsv892216	chr9:7910934-7985651	Enhancers Flanking Active TSS Weak transcription Bivalent Enhancer Active TSS ZNF genes & repeats	TF binding region lncRNA	6 gene(s)	inside rSNPs	diseases
9	nsv892217	chr9:7919153-7978514	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats	TF binding region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:13 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:7921600-7922800	Enhancers	Primary B cells from peripheral blood	blood
2	chr9:7921600-7923000	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
3	chr9:7921800-7923200	Enhancers	Fetal Brain Male	brain
4	chr9:7922000-7922600	Enhancers	Brain Anterior Caudate	brain
5	chr9:7922000-7922600	Enhancers	Brain Substantia Nigra	brain
6	chr9:7922000-7922600	Enhancers	Fetal Heart	heart
7	chr9:7922000-7922800	Enhancers	Fetal Adrenal Gland	Adrenal Gland
8	chr9:7922200-7922600	Enhancers	Brain Angular Gyrus	brain
9	chr9:7922200-7922600	Enhancers	Brain Hippocampus Middle	brain
10	chr9:7922200-7922600	Enhancers	Stomach Mucosa	stomach
11	chr9:7922200-7922800	Enhancers	Primary B cells from cord blood	blood
12	chr9:7922200-7930000	Weak transcription	Fetal Thymus	thymus
13	chr9:7922400-7929600	Weak transcription	Thymus	Thymus

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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