Variant report

Variant	rs601507
Chromosome Location	chr13:38748076-38748077
allele	A/C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 32 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:29)

rs_ID	r²[population]
rs1414646	1.00[EUR][1000 genomes]
rs1924177	1.00[EUR][1000 genomes]
rs1924178	1.00[EUR][1000 genomes]
rs1924185	1.00[AMR][1000 genomes]
rs1924186	1.00[AMR][1000 genomes]
rs1998532	1.00[EUR][1000 genomes]
rs2146982	1.00[EUR][1000 genomes]
rs2209142	1.00[EUR][1000 genomes]
rs2224798	0.87[EUR][1000 genomes]
rs2224799	1.00[AMR][1000 genomes]
rs2323670	1.00[AMR][1000 genomes]
rs2323672	1.00[AMR][1000 genomes]
rs2323706	1.00[EUR][1000 genomes]
rs2875125	1.00[AMR][1000 genomes]
rs4054444	1.00[EUR][1000 genomes]
rs4272903	1.00[AMR][1000 genomes]
rs4275734	1.00[AMR][1000 genomes]
rs4340187	1.00[AMR][1000 genomes]
rs4426227	1.00[AMR][1000 genomes]
rs4941886	1.00[EUR][1000 genomes]
rs4943559	1.00[AMR][1000 genomes]
rs7317360	1.00[EUR][1000 genomes]
rs7318312	1.00[EUR][1000 genomes]
rs7336487	1.00[AMR][1000 genomes]
rs7337020	1.00[AMR][1000 genomes]
rs9315538	1.00[AMR][1000 genomes]
rs9548190	1.00[EUR][1000 genomes]
rs9566302	1.00[EUR][1000 genomes]
rs9576446	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv915901	chr13:38199035-39032633	Enhancers Strong transcription Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases
2	nsv869125	chr13:38550449-39132813	Enhancers Weak transcription Active TSS Flanking Active TSS Strong transcription ZNF genes & repeats Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases
3	nsv949406	chr13:38561474-39033484	Transcr. at gene 5' and 3' Weak transcription Enhancers Flanking Active TSS Strong transcription Active TSS ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:38748000-38749200	Weak transcription	Stomach Mucosa	stomach

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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