Variant report

Variant	rs60150813
Chromosome Location	chr13:51732987-51732988
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr13:51730986..51733604-chr13:52024721..52026662,2	K562	blood:

Variant related genes	Relation type
ENSG00000236778	Chromatin interaction
ENSG00000102786	Chromatin interaction

Extended variants
information (count: 4 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:1)

rs_ID	r²[population]
rs9568536	0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832610	chr13:51636661-51822106	Bivalent/Poised TSS Enhancers Active TSS Weak transcription Flanking Active TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
2	nsv900079	chr13:51711436-51739168	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Strong transcription Genic enhancers Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
3	nsv900080	chr13:51711436-51754873	Enhancers Weak transcription Genic enhancers Transcr. at gene 5' and 3' Active TSS ZNF genes & repeats Flanking Active TSS Bivalent/Poised TSS Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:27 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:51727000-51733800	Enhancers	HUES6 Cell Line	embryonic stem cell
2	chr13:51728200-51742600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
3	chr13:51729000-51733200	Weak transcription	NHDF-Ad	bronchial
4	chr13:51729000-51749200	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
5	chr13:51730400-51734400	Weak transcription	Fetal Muscle Trunk	muscle
6	chr13:51731200-51733000	Weak transcription	iPS-20b Cell Line	embryonic stem cell
7	chr13:51731200-51733200	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
8	chr13:51731800-51733800	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
9	chr13:51731800-51734000	Enhancers	HUES48 Cell Line	embryonic stem cell
10	chr13:51732000-51734200	Enhancers	ES-I3 Cell Line	embryonic stem cell
11	chr13:51732200-51734000	Enhancers	iPS-15b Cell Line	embryonic stem cell
12	chr13:51732400-51733400	Enhancers	H1 Cell Line	embryonic stem cell
13	chr13:51732400-51734000	Enhancers	iPS-18 Cell Line	embryonic stem cell
14	chr13:51732600-51733000	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
15	chr13:51732600-51733400	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
16	chr13:51732600-51733400	Enhancers	Brain Cingulate Gyrus	brain
17	chr13:51732600-51733400	Enhancers	Fetal Brain Female	brain
18	chr13:51732600-51733600	Enhancers	H9 Cell Line	embryonic stem cell
19	chr13:51732600-51733600	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
20	chr13:51732600-51733600	Enhancers	Brain Hippocampus Middle	brain
21	chr13:51732600-51733800	Enhancers	Brain Germinal Matrix	brain
22	chr13:51732600-51733800	Enhancers	Fetal Muscle Leg	muscle
23	chr13:51732600-51734000	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
24	chr13:51732800-51733200	Flanking Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
25	chr13:51732800-51733600	Weak transcription	Brain Inferior Temporal Lobe	brain
26	chr13:51732800-51733600	Enhancers	Fetal Lung	lung
27	chr13:51732800-51734000	Enhancers	HUES64 Cell Line	embryonic stem cell

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