Variant report

Variant	rs60155065
Chromosome Location	chr1:180861782-180861783
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr1:180861170..180863279-chr1:180863487..180865268,2	K562	blood:
2	chr1:180857822..180860157-chr1:180861248..180863128,2	MCF-7	breast:
3	chr1:180851999..180855713-chr1:180860478..180863788,4	K562	blood:

Extended variants
information (count: 18 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs12072238	1.00[EUR][1000 genomes]
rs55993187	1.00[EUR][1000 genomes]
rs56248351	0.81[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs57076921	1.00[EUR][1000 genomes]
rs58167853	1.00[EUR][1000 genomes]
rs59291780	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs59994037	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6675116	1.00[EUR][1000 genomes]
rs74133646	1.00[EUR][1000 genomes]
rs74133647	1.00[EUR][1000 genomes]
rs74133648	1.00[EUR][1000 genomes]
rs74135814	1.00[EUR][1000 genomes]
rs74135816	1.00[EUR][1000 genomes]
rs74135829	0.84[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs74135834	0.84[AFR][1000 genomes]
rs74135835	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs74135840	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1014404	chr1:180770155-181090200	Weak transcription Active TSS Enhancers Genic enhancers Strong transcription Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	97 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:49 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:180805800-180881000	Weak transcription	Aorta	Aorta
2	chr1:180812200-180867000	Weak transcription	Ovary	ovary
3	chr1:180822000-180862800	Weak transcription	Primary T killer memory cells from peripheral blood	blood
4	chr1:180822800-180862800	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
5	chr1:180823800-180862600	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
6	chr1:180824000-180867600	Weak transcription	Fetal Muscle Leg	muscle
7	chr1:180824000-180880800	Weak transcription	Right Ventricle	heart
8	chr1:180828600-180867800	Weak transcription	HSMM	muscle
9	chr1:180830000-180867600	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
10	chr1:180832800-180861800	Weak transcription	HepG2	liver
11	chr1:180835400-180862800	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
12	chr1:180835800-180870400	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
13	chr1:180841000-180867800	Weak transcription	Lung	lung
14	chr1:180843600-180862800	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
15	chr1:180844200-180872200	Weak transcription	Esophagus	oesophagus
16	chr1:180844400-180867400	Weak transcription	iPS-20b Cell Line	embryonic stem cell
17	chr1:180845800-180869000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
18	chr1:180847400-180875400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
19	chr1:180849400-180867200	Weak transcription	H9 Cell Line	embryonic stem cell
20	chr1:180851000-180867000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
21	chr1:180851400-180867400	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
22	chr1:180851400-180867600	Weak transcription	Fetal Heart	heart
23	chr1:180851600-180862600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
24	chr1:180851600-180864200	Weak transcription	Cortex derived primary cultured neurospheres	brain
25	chr1:180851600-180867600	Weak transcription	Brain Germinal Matrix	brain
26	chr1:180851600-180867800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
27	chr1:180851800-180867400	Weak transcription	Fetal Intestine Small	intestine
28	chr1:180852000-180870400	Weak transcription	A549	lung
29	chr1:180853600-180862800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
30	chr1:180853600-180867200	Weak transcription	Adipose Nuclei	Adipose
31	chr1:180853800-180862800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
32	chr1:180853800-180867800	Weak transcription	Fetal Stomach	stomach
33	chr1:180854000-180866400	Weak transcription	Primary B cells from cord blood	blood
34	chr1:180854400-180862000	Weak transcription	Sigmoid Colon	Sigmoid Colon
35	chr1:180854400-180862000	Weak transcription	K562	blood
36	chr1:180854400-180862200	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
37	chr1:180854400-180866800	Weak transcription	Left Ventricle	heart
38	chr1:180854800-180866800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
39	chr1:180855000-180862800	Weak transcription	Primary T cells fromperipheralblood	blood
40	chr1:180857000-180862800	Weak transcription	Primary hematopoietic stem cells	blood
41	chr1:180857200-180867400	Weak transcription	Duodenum Mucosa	Duodenum
42	chr1:180857400-180863000	Weak transcription	Primary T cells from cord blood	blood
43	chr1:180857600-180869600	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
44	chr1:180858000-180862800	Weak transcription	Primary hematopoietic stem cells short term culture	blood
45	chr1:180858400-180870600	Weak transcription	Breast Myoepithelial Primary Cells	Breast
46	chr1:180858800-180867400	Weak transcription	Fetal Brain Female	brain
47	chr1:180861200-180880800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
48	chr1:180861600-180862200	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
49	chr1:180861600-180863600	Enhancers	Right Atrium	heart

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links