Variant report

Variant	rs60155495
Chromosome Location	chr3:47341471-47341472
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr3:47327276..47329634-chr3:47339647..47341726,2	MCF-7	breast:
2	chr3:47204783..47207180-chr3:47339891..47343127,3	K562	blood:

Variant related genes	Relation type
ENSG00000181555	Chromatin interaction
ENSG00000227398	Chromatin interaction

Extended variants
information (count: 16 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs17079575	0.80[AMR][1000 genomes]
rs57658701	0.90[AMR][1000 genomes]
rs59695705	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6768809	0.80[AMR][1000 genomes]
rs6769788	0.80[AMR][1000 genomes]
rs6784515	0.90[AMR][1000 genomes]
rs6795049	0.90[AMR][1000 genomes]
rs6798440	0.90[AMR][1000 genomes]
rs6799812	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs72897905	0.90[AMR][1000 genomes]
rs72909157	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs72911240	0.80[AMR][1000 genomes]
rs7623555	0.90[AMR][1000 genomes]
rs7629441	0.90[AMR][1000 genomes]
rs7646252	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv876756	chr3:47002931-47586514	Strong transcription Enhancers Weak transcription Transcr. at gene 5' and 3' Active TSS Genic enhancers Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	79 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:115 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:47325400-47361000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
2	chr3:47325600-47344600	Weak transcription	Ovary	ovary
3	chr3:47325600-47367600	Weak transcription	A549	lung
4	chr3:47325800-47343800	Weak transcription	H1 Cell Line	embryonic stem cell
5	chr3:47325800-47352000	Weak transcription	Fetal Kidney	kidney
6	chr3:47326200-47344600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
7	chr3:47326200-47356200	Weak transcription	Fetal Heart	heart
8	chr3:47326200-47356600	Weak transcription	NHDF-Ad	bronchial
9	chr3:47326200-47359600	Weak transcription	Fetal Lung	lung
10	chr3:47326200-47362200	Weak transcription	Gastric	stomach
11	chr3:47326200-47363200	Weak transcription	Rectal Mucosa Donor 31	rectum
12	chr3:47326400-47364400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
13	chr3:47326600-47351600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
14	chr3:47326800-47356600	Weak transcription	Small Intestine	intestine
15	chr3:47327000-47344400	Weak transcription	Brain Angular Gyrus	brain
16	chr3:47327600-47348400	Weak transcription	Fetal Brain Male	brain
17	chr3:47328400-47364400	Weak transcription	Pancreas	Pancrea
18	chr3:47329200-47359800	Weak transcription	NHLF	lung
19	chr3:47330000-47343400	Weak transcription	Rectal Mucosa Donor 29	rectum
20	chr3:47330400-47352000	Weak transcription	NHEK	skin
21	chr3:47330400-47356000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
22	chr3:47330600-47346200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
23	chr3:47330600-47359800	Weak transcription	Hela-S3	cervix
24	chr3:47330600-47360600	Weak transcription	Cortex derived primary cultured neurospheres	brain
25	chr3:47330800-47344200	Weak transcription	HSMMtube	muscle
26	chr3:47330800-47356600	Weak transcription	Muscle Satellite Cultured Cells	--
27	chr3:47330800-47361800	Weak transcription	HMEC	breast
28	chr3:47331000-47344000	Weak transcription	HSMM	muscle
29	chr3:47331200-47344000	Weak transcription	iPS-18 Cell Line	embryonic stem cell
30	chr3:47331400-47343200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
31	chr3:47331400-47343400	Weak transcription	Primary T helper naive cells from peripheral blood	blood
32	chr3:47332200-47361800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
33	chr3:47332400-47355600	Weak transcription	Brain Substantia Nigra	brain
34	chr3:47332600-47343000	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
35	chr3:47332600-47343400	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
36	chr3:47332600-47344000	Weak transcription	Sigmoid Colon	Sigmoid Colon
37	chr3:47332600-47361000	Weak transcription	Esophagus	oesophagus
38	chr3:47332800-47342800	Weak transcription	Dnd41	blood
39	chr3:47332800-47343000	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
40	chr3:47332800-47361000	Weak transcription	Aorta	Aorta
41	chr3:47333000-47343000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
42	chr3:47333000-47343200	Weak transcription	HUES48 Cell Line	embryonic stem cell
43	chr3:47333000-47356400	Weak transcription	Osteobl	bone
44	chr3:47333200-47343200	Weak transcription	Fetal Muscle Trunk	muscle
45	chr3:47333200-47344200	Weak transcription	HUES64 Cell Line	embryonic stem cell
46	chr3:47333200-47364800	Weak transcription	NH-A	brain
47	chr3:47333400-47343200	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
48	chr3:47333600-47343000	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
49	chr3:47333600-47343000	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
50	chr3:47333600-47343400	Weak transcription	Liver	Liver

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