Variant report

Variant	rs60159850
Chromosome Location	chr9:97646456-97646457
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr9:97579045..97581444-chr9:97644293..97648187,3	MCF-7	breast:
2	chr9:97644593..97646972-chr9:97683011..97686767,3	MCF-7	breast:
3	chr9:97643198..97646263-chr9:97646433..97648842,3	MCF-7	breast:
4	chr9:97622637..97624202-chr9:97643913..97646583,2	MCF-7	breast:
5	chr9:97640769..97645412-chr9:97646279..97650520,7	MCF-7	breast:
6	chr9:97646214..97649715-chr9:97676410..97681725,5	MCF-7	breast:

Variant related genes	Relation type
ENSG00000148120	Chromatin interaction

Extended variants
information (count: 2 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:1)

rs_ID	r²[population]
rs72750334	1.00[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv933919	chr9:97619512-97919344	Weak transcription Transcr. at gene 5' and 3' Genic enhancers Enhancers Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Active TSS Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	293 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:61 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:97633400-97646800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
2	chr9:97633400-97671800	Weak transcription	Esophagus	oesophagus
3	chr9:97634000-97646600	Weak transcription	Spleen	Spleen
4	chr9:97634000-97646800	Weak transcription	Stomach Mucosa	stomach
5	chr9:97638400-97647600	Weak transcription	iPS-20b Cell Line	embryonic stem cell
6	chr9:97638600-97661800	Weak transcription	Fetal Intestine Small	intestine
7	chr9:97641000-97647400	Weak transcription	Skeletal Muscle Female	skeletal muscle
8	chr9:97641000-97648600	Enhancers	Fetal Heart	heart
9	chr9:97641000-97650000	Weak transcription	Brain Angular Gyrus	brain
10	chr9:97641200-97647800	Weak transcription	HUES64 Cell Line	embryonic stem cell
11	chr9:97641400-97647400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
12	chr9:97641400-97647400	Weak transcription	Psoas Muscle	Psoas
13	chr9:97641600-97646600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
14	chr9:97641800-97647400	Weak transcription	Hela-S3	cervix
15	chr9:97641800-97647400	Weak transcription	K562	blood
16	chr9:97642800-97648800	Enhancers	Fetal Lung	lung
17	chr9:97643000-97646800	Enhancers	A549	lung
18	chr9:97643600-97647600	Weak transcription	NHEK	skin
19	chr9:97643800-97647400	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
20	chr9:97643800-97647400	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
21	chr9:97644000-97647400	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
22	chr9:97644000-97647400	Weak transcription	HMEC	breast
23	chr9:97644400-97646600	Weak transcription	Adipose Nuclei	Adipose
24	chr9:97644400-97647400	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
25	chr9:97644400-97647400	Weak transcription	Ovary	ovary
26	chr9:97644400-97647400	Weak transcription	Sigmoid Colon	Sigmoid Colon
27	chr9:97644400-97647400	Weak transcription	NHDF-Ad	bronchial
28	chr9:97644400-97647800	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
29	chr9:97644400-97647800	Weak transcription	Fetal Muscle Leg	muscle
30	chr9:97644400-97652000	Weak transcription	Right Atrium	heart
31	chr9:97644600-97646800	Weak transcription	Breast Myoepithelial Primary Cells	Breast
32	chr9:97644600-97647800	Weak transcription	Placenta Amnion	Placenta Amnion
33	chr9:97644800-97647400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
34	chr9:97645000-97647200	Weak transcription	Left Ventricle	heart
35	chr9:97645400-97646600	Enhancers	Brain Cingulate Gyrus	brain
36	chr9:97645400-97646800	Enhancers	Brain Substantia Nigra	brain
37	chr9:97645400-97648600	Enhancers	HSMMtube	muscle
38	chr9:97645600-97646800	Enhancers	Brain Inferior Temporal Lobe	brain
39	chr9:97645600-97647600	Weak transcription	NH-A	brain
40	chr9:97645600-97647800	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
41	chr9:97645600-97653200	Weak transcription	Fetal Brain Male	brain
42	chr9:97645800-97647400	Weak transcription	Muscle Satellite Cultured Cells	--
43	chr9:97645800-97647400	Weak transcription	Stomach Smooth Muscle	stomach
44	chr9:97645800-97647800	Weak transcription	Liver	Liver
45	chr9:97646000-97646800	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
46	chr9:97646000-97647400	Weak transcription	Fetal Kidney	kidney
47	chr9:97646000-97647400	Weak transcription	Osteobl	bone
48	chr9:97646200-97646800	Genic enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
49	chr9:97646200-97647200	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
50	chr9:97646200-97647400	Weak transcription	Cortex derived primary cultured neurospheres	brain

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