Variant report

Variant	rs60163833
Chromosome Location	chr7:4058377-4058378
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr7:4049042..4050639-chr7:4057886..4059828,2	MCF-7	breast:

Extended variants
information (count: 85 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:66)

rs_ID	r²[population]
rs10228678	0.81[ASN][1000 genomes]
rs10237319	0.81[ASN][1000 genomes]
rs10253213	0.81[ASN][1000 genomes]
rs10254902	0.81[ASN][1000 genomes]
rs10480120	0.92[ASN][1000 genomes]
rs10485860	0.81[ASN][1000 genomes]
rs11974413	0.81[ASN][1000 genomes]
rs12155078	0.81[ASN][1000 genomes]
rs12155314	0.81[ASN][1000 genomes]
rs12155501	0.81[ASN][1000 genomes]
rs12701363	0.81[ASN][1000 genomes]
rs13226987	0.81[ASN][1000 genomes]
rs1562006	0.81[ASN][1000 genomes]
rs17265128	0.92[ASN][1000 genomes]
rs17330921	0.96[ASN][1000 genomes]
rs1808948	0.89[AFR][1000 genomes];0.92[AMR][1000 genomes];0.95[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs2342494	0.81[ASN][1000 genomes]
rs2342497	0.81[ASN][1000 genomes]
rs2342498	0.81[ASN][1000 genomes]
rs28372090	0.81[ASN][1000 genomes]
rs28458813	0.81[ASN][1000 genomes]
rs28591614	0.81[ASN][1000 genomes]
rs28692591	0.81[ASN][1000 genomes]
rs2880372	0.81[ASN][1000 genomes]
rs35018186	0.84[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs35261707	0.81[ASN][1000 genomes]
rs35303581	0.81[ASN][1000 genomes]
rs35750587	0.81[ASN][1000 genomes]
rs35914968	0.81[ASN][1000 genomes]
rs4442012	0.81[ASN][1000 genomes]
rs56155108	0.89[ASN][1000 genomes]
rs56249161	0.88[ASN][1000 genomes]
rs56958588	0.81[ASN][1000 genomes]
rs60562202	0.81[ASN][1000 genomes]
rs61752593	0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs6462534	0.89[ASN][1000 genomes]
rs6462544	0.81[ASN][1000 genomes]
rs6462547	0.81[ASN][1000 genomes]
rs6462551	0.81[ASN][1000 genomes]
rs6462562	0.81[ASN][1000 genomes]
rs66493879	0.81[ASN][1000 genomes]
rs66813989	0.81[ASN][1000 genomes]
rs6942556	0.88[EUR][1000 genomes]
rs6943539	0.81[ASN][1000 genomes]
rs6953114	0.81[ASN][1000 genomes]
rs6957994	0.81[ASN][1000 genomes]
rs6958682	0.81[ASN][1000 genomes]
rs6962042	0.81[ASN][1000 genomes]
rs6968367	0.88[EUR][1000 genomes]
rs6972327	0.81[ASN][1000 genomes]
rs6976151	0.81[ASN][1000 genomes]
rs6977480	0.81[ASN][1000 genomes]
rs71527467	0.81[ASN][1000 genomes]
rs71535248	0.81[ASN][1000 genomes]
rs7779616	0.81[ASN][1000 genomes]
rs7781059	0.81[ASN][1000 genomes]
rs7794939	0.81[ASN][1000 genomes]
rs7799331	0.81[ASN][1000 genomes]
rs7804112	0.81[ASN][1000 genomes]
rs7807487	0.88[ASN][1000 genomes]
rs7810233	0.81[ASN][1000 genomes]
rs894776	0.96[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs894777	0.89[EUR][1000 genomes]
rs963255	0.81[ASN][1000 genomes]
rs9691924	0.81[ASN][1000 genomes]
rs9692219	0.81[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:19 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1021650	chr7:3665232-4577439	Flanking Active TSS Enhancers Active TSS Weak transcription Strong transcription ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
2	nsv1029406	chr7:3860894-4477095	Enhancers Weak transcription Bivalent/Poised TSS Flanking Active TSS Active TSS Strong transcription Genic enhancers Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
3	nsv538685	chr7:3860894-4477095	Weak transcription Enhancers Strong transcription Genic enhancers Bivalent Enhancer ZNF genes & repeats Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
4	nsv1026410	chr7:3869104-4383606	Enhancers Weak transcription Active TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
5	nsv1025497	chr7:3905444-4176032	Enhancers Strong transcription ZNF genes & repeats Genic enhancers Weak transcription Bivalent Enhancer Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
6	nsv538686	chr7:3905444-4176032	Enhancers Weak transcription Strong transcription Genic enhancers Bivalent Enhancer ZNF genes & repeats Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
7	nsv464274	chr7:3955516-4613607	Weak transcription Active TSS Enhancers Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Strong transcription Genic enhancers Flanking Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
8	nsv464275	chr7:3955516-4613607	Enhancers Active TSS Strong transcription Bivalent Enhancer Weak transcription Flanking Active TSS ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
9	nsv464276	chr7:3955516-4613607	Strong transcription Weak transcription ZNF genes & repeats Active TSS Enhancers Flanking Active TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
10	nsv464277	chr7:3955516-4613607	Enhancers Bivalent Enhancer Weak transcription Active TSS ZNF genes & repeats Strong transcription Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
11	nsv464278	chr7:3955516-4613607	Strong transcription Enhancers Flanking Bivalent TSS/Enh Weak transcription Flanking Active TSS Genic enhancers Active TSS ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
12	nsv605939	chr7:3955516-4613607	Enhancers Strong transcription Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Bivalent/Poised TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
13	nsv1019305	chr7:3991646-4276004	Enhancers Weak transcription Bivalent Enhancer Strong transcription Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Active TSS Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
14	nsv1033687	chr7:4006020-4267871	Enhancers Weak transcription ZNF genes & repeats Bivalent Enhancer Genic enhancers Flanking Active TSS Strong transcription Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
15	nsv538688	chr7:4006020-4267871	Enhancers Bivalent Enhancer Active TSS Weak transcription Strong transcription Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
16	nsv917252	chr7:4017819-4374090	Weak transcription Active TSS Enhancers ZNF genes & repeats Strong transcription Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
17	nsv527624	chr7:4027536-4424054	Enhancers ZNF genes & repeats Weak transcription Strong transcription Active TSS Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
18	nsv523815	chr7:4054773-4088876	Weak transcription Enhancers ZNF genes & repeats Strong transcription Flanking Active TSS Active TSS Genic enhancers Bivalent Enhancer	Chromatin interactive region	n/a	inside rSNPs	diseases
19	nsv887338	chr7:4054773-4105705	Weak transcription Enhancers Genic enhancers Strong transcription ZNF genes & repeats Active TSS Flanking Active TSS Bivalent Enhancer	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:23 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:4031200-4058400	Weak transcription	Gastric	stomach
2	chr7:4047000-4058400	Weak transcription	Duodenum Smooth Muscle	Duodenum
3	chr7:4049000-4058400	Weak transcription	Colon Smooth Muscle	Colon
4	chr7:4050000-4058600	Weak transcription	Right Ventricle	heart
5	chr7:4050000-4059200	Weak transcription	Rectal Smooth Muscle	rectum
6	chr7:4051200-4065600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
7	chr7:4052000-4061000	Weak transcription	iPS-15b Cell Line	embryonic stem cell
8	chr7:4053800-4065800	Weak transcription	Fetal Brain Male	brain
9	chr7:4054200-4065400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
10	chr7:4054600-4058400	Weak transcription	Fetal Lung	lung
11	chr7:4055400-4058400	Weak transcription	Spleen	Spleen
12	chr7:4055400-4058600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
13	chr7:4056000-4058400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
14	chr7:4056000-4058400	Weak transcription	Fetal Intestine Small	intestine
15	chr7:4056000-4058400	Weak transcription	Pancreas	Pancrea
16	chr7:4056200-4060000	ZNF genes & repeats	Ganglion Eminence derived primary cultured neurospheres	brain
17	chr7:4057200-4058400	Weak transcription	Muscle Satellite Cultured Cells	--
18	chr7:4057200-4058400	Weak transcription	Aorta	Aorta
19	chr7:4057800-4058400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
20	chr7:4058000-4059200	ZNF genes & repeats	Fetal Muscle Trunk	muscle
21	chr7:4058200-4059200	ZNF genes & repeats	Pancreatic Islets	Pancreatic Islet
22	chr7:4058200-4060000	ZNF genes & repeats	Fetal Muscle Leg	muscle
23	chr7:4058200-4061400	ZNF genes & repeats	Fetal Stomach	stomach

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