Variant report

Variant	rs60164283
Chromosome Location	chr1:76652437-76652438
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 85 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:84)

rs_ID	r²[population]
rs10493585	0.86[AMR][1000 genomes];0.95[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs10493586	0.88[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs10493587	0.86[AMR][1000 genomes];0.95[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs10873868	0.95[ASN][1000 genomes]
rs11162094	0.95[ASN][1000 genomes]
rs12080978	0.95[ASN][1000 genomes]
rs12083141	0.95[ASN][1000 genomes]
rs12085592	0.95[ASN][1000 genomes]
rs12086586	0.95[ASN][1000 genomes]
rs12089339	0.95[ASN][1000 genomes]
rs12089419	0.95[ASN][1000 genomes]
rs12089425	0.95[ASN][1000 genomes]
rs12136476	0.95[ASN][1000 genomes]
rs12136538	0.95[ASN][1000 genomes]
rs12138879	0.95[ASN][1000 genomes]
rs12138975	0.95[ASN][1000 genomes]
rs12139114	0.95[ASN][1000 genomes]
rs1684945	0.95[ASN][1000 genomes]
rs17098319	0.86[AMR][1000 genomes];0.95[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs17098322	0.86[AMR][1000 genomes];0.95[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs17098326	0.86[AMR][1000 genomes];0.95[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs17098328	0.86[AMR][1000 genomes];0.94[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs17098330	0.86[AMR][1000 genomes];0.94[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs17098332	0.87[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs17098335	0.86[AMR][1000 genomes];0.95[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs17098336	0.86[AMR][1000 genomes];0.95[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs17098338	0.86[AMR][1000 genomes];0.95[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs17098341	0.88[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs17098353	0.86[AFR][1000 genomes];0.94[AMR][1000 genomes];0.92[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs17668894	0.86[AMR][1000 genomes];0.95[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs17669251	0.86[AFR][1000 genomes];0.94[AMR][1000 genomes];0.92[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs2087137	0.86[AMR][1000 genomes];0.95[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs2631795	0.95[ASN][1000 genomes]
rs28485639	0.95[ASN][1000 genomes]
rs376878	0.95[ASN][1000 genomes]
rs409936	0.90[ASN][1000 genomes]
rs411756	0.86[ASN][1000 genomes]
rs417738	0.86[ASN][1000 genomes]
rs417932	0.95[ASN][1000 genomes]
rs432956	0.95[ASN][1000 genomes]
rs57736626	0.86[AMR][1000 genomes];0.95[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs592872	0.95[ASN][1000 genomes]
rs59372100	0.86[AMR][1000 genomes];0.95[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs59542062	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes];0.92[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs60006887	0.86[AMR][1000 genomes];0.95[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs60056501	0.86[AMR][1000 genomes];0.95[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs61066589	0.86[AMR][1000 genomes];0.92[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs638947	0.82[ASN][1000 genomes]
rs66489023	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs66498881	0.86[AMR][1000 genomes];0.95[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs66533016	0.88[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs66534155	0.86[AMR][1000 genomes];0.94[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs66662371	0.86[AMR][1000 genomes];0.95[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs66803626	0.86[AMR][1000 genomes];0.92[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs66821894	0.86[AMR][1000 genomes];0.95[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs66981034	0.86[AMR][1000 genomes];0.95[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs67625167	0.86[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs67665131	0.86[AMR][1000 genomes];0.95[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs67740172	0.86[AMR][1000 genomes];0.95[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs67877759	0.86[AFR][1000 genomes];0.94[AMR][1000 genomes];0.92[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs68000528	0.86[AMR][1000 genomes];0.95[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs68053488	0.86[AMR][1000 genomes];0.95[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs68091079	0.86[AMR][1000 genomes];0.92[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs72674458	0.89[AMR][1000 genomes];0.95[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs72674492	0.86[AMR][1000 genomes];0.95[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs72675907	0.86[AMR][1000 genomes];0.94[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs72675908	0.84[ASN][1000 genomes]
rs72675909	0.80[AMR][1000 genomes];0.84[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs72675910	0.86[AMR][1000 genomes];0.95[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs72675912	0.86[AMR][1000 genomes];0.92[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs72996565	0.86[AMR][1000 genomes];0.95[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs72996566	0.88[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs72996595	0.86[AMR][1000 genomes];0.92[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs7512081	0.95[ASN][1000 genomes]
rs7514776	0.95[ASN][1000 genomes]
rs7521939	0.95[ASN][1000 genomes]
rs7528649	0.86[ASN][1000 genomes]
rs7528680	0.95[ASN][1000 genomes]
rs7528766	0.95[ASN][1000 genomes]
rs7532337	0.95[ASN][1000 genomes]
rs7534087	0.95[ASN][1000 genomes]
rs7536455	0.95[ASN][1000 genomes]
rs7540069	0.95[ASN][1000 genomes]
rs7552671	0.95[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv870621	chr1:76620313-76997071	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:17 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:76636600-76652800	Weak transcription	Primary B cells from cord blood	blood
2	chr1:76644800-76653200	Weak transcription	H9 Cell Line	embryonic stem cell
3	chr1:76645400-76652600	Weak transcription	HUVEC	blood vessel
4	chr1:76646600-76652600	Weak transcription	Brain Hippocampus Middle	brain
5	chr1:76646600-76658000	Weak transcription	Fetal Stomach	stomach
6	chr1:76646800-76652800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
7	chr1:76646800-76653200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
8	chr1:76647000-76665600	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
9	chr1:76649000-76652600	Weak transcription	Brain Cingulate Gyrus	brain
10	chr1:76651800-76652600	Enhancers	Fetal Kidney	kidney
11	chr1:76651800-76653000	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
12	chr1:76651800-76653000	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
13	chr1:76651800-76653600	Enhancers	Brain Anterior Caudate	brain
14	chr1:76652000-76654600	Weak transcription	Aorta	Aorta
15	chr1:76652400-76653200	Enhancers	Cortex derived primary cultured neurospheres	brain
16	chr1:76652400-76653600	Enhancers	Fetal Brain Male	brain
17	chr1:76652400-76654800	Weak transcription	Brain Inferior Temporal Lobe	brain

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