Variant report

Variant	rs60167392
Chromosome Location	chr3:50004450-50004451
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr3:49978223..49979811-chr3:50003793..50005372,2	K562	blood:

Extended variants
information (count: 5 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:1)

rs_ID	r²[population]
rs72940407	1.00[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv834688	chr3:49811115-50019299	Weak transcription Active TSS Flanking Active TSS Strong transcription Enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	60 gene(s)	inside rSNPs	diseases
2	nsv876767	chr3:49918751-50153356	Active TSS Genic enhancers Weak transcription Transcr. at gene 5' and 3' Strong transcription Flanking Active TSS Enhancers Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	54 gene(s)	inside rSNPs	diseases
3	nsv834689	chr3:49962930-50085119	Enhancers Weak transcription Flanking Active TSS Strong transcription Genic enhancers Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	22 gene(s)	inside rSNPs	diseases
4	nsv1012903	chr3:49978765-50071878	Weak transcription Strong transcription Enhancers Genic enhancers Active TSS Flanking Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:121 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:49978800-50004800	Weak transcription	HUES6 Cell Line	embryonic stem cell
2	chr3:49978800-50009600	Weak transcription	H1 Cell Line	embryonic stem cell
3	chr3:49978800-50009600	Weak transcription	Fetal Kidney	kidney
4	chr3:49978800-50041000	Weak transcription	H9 Cell Line	embryonic stem cell
5	chr3:49979000-50005200	Weak transcription	Fetal Muscle Trunk	muscle
6	chr3:49979000-50010200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
7	chr3:49988200-50007000	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
8	chr3:49988200-50007400	Weak transcription	Rectal Mucosa Donor 31	rectum
9	chr3:49988200-50010200	Weak transcription	Gastric	stomach
10	chr3:49988200-50010600	Weak transcription	Primary T helper naive cells from peripheral blood	blood
11	chr3:49988400-50009600	Weak transcription	Fetal Brain Female	brain
12	chr3:49988400-50009600	Weak transcription	HUVEC	blood vessel
13	chr3:49988800-50004800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
14	chr3:49991200-50005800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
15	chr3:49992200-50037000	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
16	chr3:49995000-50005200	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
17	chr3:49995400-50033200	Weak transcription	Fetal Brain Male	brain
18	chr3:49995600-50005800	Weak transcription	Spleen	Spleen
19	chr3:49996600-50010200	Weak transcription	Lung	lung
20	chr3:49997000-50010600	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
21	chr3:49997600-50007400	Weak transcription	Right Atrium	heart
22	chr3:49997600-50009600	Weak transcription	A549	lung
23	chr3:49997800-50009600	Weak transcription	Primary T killer memory cells from peripheral blood	blood
24	chr3:49997800-50009800	Weak transcription	iPS-15b Cell Line	embryonic stem cell
25	chr3:49997800-50013800	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
26	chr3:49998000-50078200	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
27	chr3:49998200-50007600	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
28	chr3:49998400-50004800	Weak transcription	Thymus	Thymus
29	chr3:49998400-50029600	Weak transcription	Fetal Heart	heart
30	chr3:49998400-50078600	Weak transcription	K562	blood
31	chr3:49998800-50019600	Strong transcription	Primary hematopoietic stem cells short term culture	blood
32	chr3:49999000-50007800	Strong transcription	Fetal Thymus	thymus
33	chr3:49999600-50006800	Strong transcription	Primary T helper cells fromperipheralblood	blood
34	chr3:49999600-50007800	Strong transcription	Primary monocytes fromperipheralblood	blood
35	chr3:49999800-50006200	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
36	chr3:49999800-50011000	Strong transcription	Monocytes-CD14+_RO01746	blood
37	chr3:49999800-50028400	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
38	chr3:50000000-50019600	Strong transcription	Dnd41	blood
39	chr3:50000600-50011000	Strong transcription	Primary B cells from cord blood	blood
40	chr3:50000600-50011000	Strong transcription	Primary T cells from cord blood	blood
41	chr3:50001000-50006200	Strong transcription	GM12878-XiMat	blood
42	chr3:50001200-50005800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
43	chr3:50001600-50004800	Weak transcription	Fetal Intestine Small	intestine
44	chr3:50001600-50004800	Weak transcription	Fetal Muscle Leg	muscle
45	chr3:50001600-50005000	Weak transcription	Fetal Intestine Large	intestine
46	chr3:50001800-50005000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
47	chr3:50001800-50009400	Weak transcription	Brain Germinal Matrix	brain
48	chr3:50001800-50009400	Weak transcription	Placenta	Placenta
49	chr3:50002000-50004600	Weak transcription	HUES64 Cell Line	embryonic stem cell
50	chr3:50002000-50005000	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links