Variant report

Variant	rs60170713
Chromosome Location	chr11:71662340-71662341
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr11:71661210..71663461-chr11:71665866..71667578,2	MCF-7	breast:
2	chr11:71657360..71659144-chr11:71661756..71664920,3	MCF-7	breast:
3	chr11:71661332..71663442-chr11:71663667..71665377,2	K562	blood:
4	chr11:71660827..71663161-chr11:71663850..71665849,2	MCF-7	breast:
5	chr11:71639007..71647132-chr11:71654924..71662463,14	MCF-7	breast:

Variant related genes	Relation type
ENSG00000137522	Chromatin interaction
ENSG00000254469	Chromatin interaction

Extended variants
information (count: 9 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs34239655	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs34335618	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs35342866	1.00[AMR][1000 genomes]
rs56759837	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs5743679	1.00[AMR][1000 genomes]
rs58115454	1.00[AMR][1000 genomes]
rs58971776	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv530623	chr11:71088949-72020418	Enhancers Transcr. at gene 5' and 3' Active TSS Strong transcription Bivalent Enhancer Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	134 gene(s)	inside rSNPs	diseases
2	nsv428262	chr11:71363639-71804055	Enhancers Active TSS Strong transcription Weak transcription Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA	55 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:101 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:71641000-71671000	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
2	chr11:71641200-71670800	Weak transcription	Fetal Muscle Trunk	muscle
3	chr11:71641200-71671400	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
4	chr11:71641400-71670800	Weak transcription	Esophagus	oesophagus
5	chr11:71641400-71671000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
6	chr11:71641400-71671000	Weak transcription	Fetal Thymus	thymus
7	chr11:71641400-71671400	Weak transcription	iPS-20b Cell Line	embryonic stem cell
8	chr11:71641600-71670800	Weak transcription	Spleen	Spleen
9	chr11:71641600-71671400	Weak transcription	HUES48 Cell Line	embryonic stem cell
10	chr11:71641600-71671600	Weak transcription	iPS-18 Cell Line	embryonic stem cell
11	chr11:71641600-71671600	Weak transcription	Brain Germinal Matrix	brain
12	chr11:71641600-71671600	Weak transcription	Brain Hippocampus Middle	brain
13	chr11:71641600-71673400	Weak transcription	NHLF	lung
14	chr11:71641800-71671600	Weak transcription	HUES6 Cell Line	embryonic stem cell
15	chr11:71642400-71671000	Weak transcription	Cortex derived primary cultured neurospheres	brain
16	chr11:71642400-71671000	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
17	chr11:71642600-71671000	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
18	chr11:71642600-71671200	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
19	chr11:71642800-71671200	Weak transcription	Dnd41	blood
20	chr11:71642800-71671400	Weak transcription	Fetal Brain Female	brain
21	chr11:71644200-71665600	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
22	chr11:71645600-71671200	Weak transcription	Primary T helper cells PMA-I stimulated	--
23	chr11:71645800-71671400	Weak transcription	Primary T helper cells fromperipheralblood	blood
24	chr11:71648800-71671600	Weak transcription	Rectal Smooth Muscle	rectum
25	chr11:71649000-71662600	Weak transcription	Brain Cingulate Gyrus	brain
26	chr11:71649200-71662400	Weak transcription	Breast Myoepithelial Primary Cells	Breast
27	chr11:71649200-71666400	Weak transcription	Primary B cells from cord blood	blood
28	chr11:71649200-71670800	Weak transcription	Fetal Stomach	stomach
29	chr11:71649200-71671000	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
30	chr11:71649400-71662400	Weak transcription	Brain Inferior Temporal Lobe	brain
31	chr11:71649400-71667400	Weak transcription	Primary T cells from cord blood	blood
32	chr11:71651000-71670800	Weak transcription	Placenta	Placenta
33	chr11:71652000-71671200	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
34	chr11:71652200-71671200	Weak transcription	Aorta	Aorta
35	chr11:71654200-71671200	Weak transcription	Primary T killer memory cells from peripheral blood	blood
36	chr11:71654600-71662600	Weak transcription	Brain Angular Gyrus	brain
37	chr11:71656000-71670800	Weak transcription	Primary B cells from peripheral blood	blood
38	chr11:71656800-71668200	Weak transcription	Monocytes-CD14+_RO01746	blood
39	chr11:71657000-71670800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
40	chr11:71657400-71670200	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
41	chr11:71657800-71671200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
42	chr11:71658800-71671000	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
43	chr11:71658800-71671000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
44	chr11:71658800-71677800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
45	chr11:71659000-71663000	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
46	chr11:71659000-71671200	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
47	chr11:71659200-71671600	Weak transcription	NHEK	skin
48	chr11:71659600-71671200	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
49	chr11:71659800-71671200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
50	chr11:71659800-71671600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived

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