Variant report

Variant	rs60175069
Chromosome Location	chr7:21804852-21804853
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 10 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:6)

rs_ID	r²[population]
rs10241767	0.81[ASN][1000 genomes]
rs16872944	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs17145312	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1989904	0.82[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs1989906	0.88[ASN][1000 genomes]
rs7793192	0.93[EUR][1000 genomes];0.94[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1018133	chr7:21740118-22055283	Active TSS Enhancers Strong transcription Weak transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	22 gene(s)	inside rSNPs	diseases
2	nsv1016063	chr7:21740433-21808410	Active TSS Enhancers Weak transcription Bivalent Enhancer ZNF genes & repeats Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
3	nsv830922	chr7:21793386-21964675	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Strong transcription Genic enhancers Bivalent Enhancer Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region miRNA target site	3 gene(s)	inside rSNPs	diseases
4	nsv470177	chr7:21801125-21817048	Flanking Active TSS Enhancers Bivalent Enhancer Weak transcription Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:19 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:21795000-21805200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
2	chr7:21796600-21810000	Weak transcription	HUES48 Cell Line	embryonic stem cell
3	chr7:21797600-21805000	Weak transcription	HUES6 Cell Line	embryonic stem cell
4	chr7:21803400-21808000	Enhancers	Fetal Heart	heart
5	chr7:21804000-21805800	Enhancers	iPS-18 Cell Line	embryonic stem cell
6	chr7:21804000-21808000	Enhancers	Cortex derived primary cultured neurospheres	brain
7	chr7:21804200-21805200	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
8	chr7:21804200-21805200	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
9	chr7:21804200-21805600	Enhancers	H1 Cell Line	embryonic stem cell
10	chr7:21804200-21805600	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
11	chr7:21804400-21805000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
12	chr7:21804400-21805200	Enhancers	iPS-20b Cell Line	embryonic stem cell
13	chr7:21804400-21805400	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
14	chr7:21804600-21805600	Enhancers	HUES64 Cell Line	embryonic stem cell
15	chr7:21804800-21805000	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
16	chr7:21804800-21805200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
17	chr7:21804800-21805600	Enhancers	H9 Cell Line	embryonic stem cell
18	chr7:21804800-21805800	Enhancers	ES-I3 Cell Line	embryonic stem cell
19	chr7:21804800-21806600	Bivalent Enhancer	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived

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dbSNP/dbVar ID: rs12345 /nsv7879
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chromosomal regions: chr1:12345-34567

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