Variant report

Variant	rs60175675
Chromosome Location	chr12:29193560-29193561
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-FAR2-1	chr12:29193463-29193825	XLOC_009696

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs11050056	1.00[AMR][1000 genomes]
rs11615471	1.00[ASN][1000 genomes]
rs12578967	1.00[AMR][1000 genomes]
rs16933714	0.83[ASN][1000 genomes]
rs16933715	0.83[ASN][1000 genomes]
rs16933717	0.83[ASN][1000 genomes]
rs16933732	0.83[ASN][1000 genomes]
rs16933779	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16933795	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs57083954	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv532233	chr12:29009388-29496179	Flanking Active TSS Enhancers Active TSS Weak transcription Strong transcription Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	18 gene(s)	inside rSNPs	diseases
2	nsv995123	chr12:29095272-29571558	Weak transcription Flanking Active TSS Enhancers Active TSS Strong transcription ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	35 gene(s)	inside rSNPs	diseases
3	esv2758301	chr12:29110782-29289849	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
4	esv2759888	chr12:29110782-29289849	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:20 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:29190000-29194200	Weak transcription	Duodenum Mucosa	Duodenum
2	chr12:29191400-29194200	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
3	chr12:29191400-29197200	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
4	chr12:29191600-29194400	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
5	chr12:29191600-29196000	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
6	chr12:29191800-29194800	Enhancers	Fetal Intestine Large	intestine
7	chr12:29191800-29194800	Enhancers	Fetal Intestine Small	intestine
8	chr12:29191800-29197000	Enhancers	NHLF	lung
9	chr12:29192400-29194400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
10	chr12:29192600-29194400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
11	chr12:29192600-29194600	Enhancers	Sigmoid Colon	Sigmoid Colon
12	chr12:29192600-29195600	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
13	chr12:29192800-29193800	Weak transcription	Muscle Satellite Cultured Cells	--
14	chr12:29192800-29193800	Weak transcription	Osteobl	bone
15	chr12:29192800-29194200	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
16	chr12:29192800-29194400	Weak transcription	Fetal Kidney	kidney
17	chr12:29192800-29194400	Enhancers	NHDF-Ad	bronchial
18	chr12:29193000-29194400	Enhancers	Rectal Mucosa Donor 31	rectum
19	chr12:29193200-29194200	Weak transcription	Fetal Muscle Leg	muscle
20	chr12:29193200-29196000	Weak transcription	Fetal Stomach	stomach

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