Variant report

Variant	rs60177071
Chromosome Location	chr3:180344797-180344798
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 12 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs11914833	0.92[EUR][1000 genomes]
rs11923577	0.97[EUR][1000 genomes]
rs13434282	0.88[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs2338436	0.93[AFR][1000 genomes];0.91[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs60226914	0.97[EUR][1000 genomes]
rs60931741	0.97[EUR][1000 genomes]
rs6807767	0.97[EUR][1000 genomes]
rs73051767	0.98[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9864971	0.98[AFR][1000 genomes];0.89[AMR][1000 genomes];0.92[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1007831	chr3:180162003-180348203	Weak transcription Enhancers Flanking Active TSS Strong transcription Active TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
2	nsv536818	chr3:180162003-180348203	Strong transcription Weak transcription Active TSS Flanking Active TSS Enhancers Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
3	esv3359190	chr3:180298396-180397223	Weak transcription Active TSS Strong transcription Flanking Bivalent TSS/Enh Enhancers Flanking Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Genic enhancers Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:73 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:180329400-180349400	Weak transcription	Brain Angular Gyrus	brain
2	chr3:180329600-180348600	Weak transcription	Psoas Muscle	Psoas
3	chr3:180330600-180345400	Weak transcription	H9 Cell Line	embryonic stem cell
4	chr3:180330600-180346000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
5	chr3:180330600-180346000	Weak transcription	Brain Inferior Temporal Lobe	brain
6	chr3:180330600-180346000	Weak transcription	Ovary	ovary
7	chr3:180330600-180346200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
8	chr3:180330600-180347400	Weak transcription	Left Ventricle	heart
9	chr3:180330800-180345600	Weak transcription	Sigmoid Colon	Sigmoid Colon
10	chr3:180330800-180346200	Weak transcription	Skeletal Muscle Female	skeletal muscle
11	chr3:180330800-180346400	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
12	chr3:180331200-180346200	Weak transcription	Thymus	Thymus
13	chr3:180331200-180346200	Weak transcription	A549	lung
14	chr3:180331200-180346800	Weak transcription	Cortex derived primary cultured neurospheres	brain
15	chr3:180331200-180347800	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
16	chr3:180331200-180348000	Weak transcription	Brain Hippocampus Middle	brain
17	chr3:180331200-180348000	Weak transcription	NHEK	skin
18	chr3:180331400-180345000	Weak transcription	Adipose Nuclei	Adipose
19	chr3:180331400-180345800	Weak transcription	Primary T helper cells fromperipheralblood	blood
20	chr3:180331400-180346400	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
21	chr3:180331400-180347000	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
22	chr3:180331600-180345000	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
23	chr3:180331600-180348000	Weak transcription	HUVEC	blood vessel
24	chr3:180331800-180346000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
25	chr3:180331800-180348200	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
26	chr3:180331800-180363200	Weak transcription	Brain Anterior Caudate	brain
27	chr3:180332000-180346000	Weak transcription	HUES6 Cell Line	embryonic stem cell
28	chr3:180332000-180346000	Weak transcription	Primary T helper cells PMA-I stimulated	--
29	chr3:180332000-180349800	Weak transcription	Primary T cells fromperipheralblood	blood
30	chr3:180332800-180348000	Weak transcription	HMEC	breast
31	chr3:180334200-180347600	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
32	chr3:180336000-180345200	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
33	chr3:180336200-180345800	Weak transcription	NH-A	brain
34	chr3:180336400-180346000	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
35	chr3:180336400-180346000	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
36	chr3:180336400-180346200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
37	chr3:180340600-180347800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
38	chr3:180342600-180344800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
39	chr3:180342600-180348400	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
40	chr3:180342800-180346000	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
41	chr3:180343000-180346200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
42	chr3:180343200-180345000	Strong transcription	Primary T cells from cord blood	blood
43	chr3:180343200-180346800	Weak transcription	Primary B cells from cord blood	blood
44	chr3:180343400-180344800	Strong transcription	Primary T helper naive cells from peripheral blood	blood
45	chr3:180343400-180345000	Strong transcription	Breast Myoepithelial Primary Cells	Breast
46	chr3:180343400-180345000	Strong transcription	Foreskin Fibroblast Primary Cells skin01	Skin
47	chr3:180343600-180344800	Strong transcription	ES-UCSF4 Cell Line	embryonic stem cell
48	chr3:180343600-180344800	Strong transcription	Fetal Brain Female	brain
49	chr3:180343600-180345000	Strong transcription	HSMMtube	muscle
50	chr3:180343800-180345000	Strong transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived

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