Variant report

Variant	rs60177896
Chromosome Location	chr3:86513540-86513541
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 17 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs28831842	0.81[ASN][1000 genomes]
rs34488099	0.86[ASN][1000 genomes]
rs73844225	0.82[ASN][1000 genomes]
rs9811445	0.82[ASN][1000 genomes]
rs9813778	0.86[ASN][1000 genomes]
rs9830475	0.82[ASN][1000 genomes]
rs9830624	0.82[ASN][1000 genomes]
rs9831274	0.82[ASN][1000 genomes]
rs9835126	0.82[ASN][1000 genomes]
rs9835169	0.82[ASN][1000 genomes]
rs9847978	0.82[ASN][1000 genomes]
rs9848467	0.82[ASN][1000 genomes]
rs9848758	0.81[ASN][1000 genomes]
rs9853248	0.82[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv532629	chr3:85763873-86608579	Enhancers Active TSS Flanking Active TSS Weak transcription ZNF genes & repeats Bivalent Enhancer Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
2	nsv877115	chr3:86278951-86554319	Flanking Active TSS Enhancers Weak transcription Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
3	nsv834753	chr3:86386749-86546500	Enhancers Weak transcription Active TSS Bivalent Enhancer ZNF genes & repeats Flanking Active TSS	TF binding region Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:0 , 50 per page) page:

No data

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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