Variant report

Variant	rs60179470
Chromosome Location	chr2:173243547-173243548
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr2:173241953..173243647-chr2:173245498..173247532,2	MCF-7	breast:
2	chr2:173238115..173240809-chr2:173241863..173243674,2	MCF-7	breast:
3	chr2:173240902..173243860-chr2:173291446..173293970,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000226963	Chromatin interaction
ENSG00000091409	Chromatin interaction

Extended variants
information (count: 4 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:3)

rs_ID	r²[population]
rs58903557	1.00[AMR][1000 genomes]
rs60955305	1.00[AMR][1000 genomes]
rs73024158	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv533927	chr2:173161637-173796894	Active TSS Enhancers Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Strong transcription Weak transcription Bivalent Enhancer Flanking Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	44 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:29 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:173238400-173243800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
2	chr2:173239200-173260200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
3	chr2:173239800-173245400	Weak transcription	Fetal Kidney	kidney
4	chr2:173240200-173243600	Weak transcription	Fetal Intestine Small	intestine
5	chr2:173240400-173245000	Weak transcription	HSMMtube	muscle
6	chr2:173240800-173243800	Weak transcription	Duodenum Mucosa	Duodenum
7	chr2:173240800-173244800	Weak transcription	Fetal Intestine Large	intestine
8	chr2:173241000-173245400	Weak transcription	Gastric	stomach
9	chr2:173241200-173244800	Weak transcription	Monocytes-CD14+_RO01746	blood
10	chr2:173242000-173244400	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
11	chr2:173242000-173245200	Weak transcription	Stomach Mucosa	stomach
12	chr2:173242200-173244800	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
13	chr2:173242400-173243800	Weak transcription	Lung	lung
14	chr2:173242400-173245000	Weak transcription	HUVEC	blood vessel
15	chr2:173242600-173243600	Weak transcription	H9 Cell Line	embryonic stem cell
16	chr2:173242600-173245000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
17	chr2:173242600-173245400	Weak transcription	Left Ventricle	heart
18	chr2:173242800-173244000	Weak transcription	Liver	Liver
19	chr2:173242800-173244800	Weak transcription	Spleen	Spleen
20	chr2:173242800-173245200	Weak transcription	Pancreas	Pancrea
21	chr2:173242800-173245600	Weak transcription	Right Atrium	heart
22	chr2:173243000-173244000	Weak transcription	HUES64 Cell Line	embryonic stem cell
23	chr2:173243400-173243600	Enhancers	ES-WA7 Cell Line	embryonic stem cell
24	chr2:173243400-173243600	Enhancers	HUES48 Cell Line	embryonic stem cell
25	chr2:173243400-173243800	Enhancers	HepG2	liver
26	chr2:173243400-173244000	Enhancers	iPS-18 Cell Line	embryonic stem cell
27	chr2:173243400-173244400	ZNF genes & repeats	ES-I3 Cell Line	embryonic stem cell
28	chr2:173243400-173244400	ZNF genes & repeats	iPS-20b Cell Line	embryonic stem cell
29	chr2:173243400-173245200	Enhancers	iPS-15b Cell Line	embryonic stem cell

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links