Variant report

Variant	rs60181978
Chromosome Location	chr13:54163930-54163931
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 16 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs11617582	0.90[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs17069551	0.93[ASN][1000 genomes]
rs17576331	0.81[AFR][1000 genomes];0.87[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs17576759	0.90[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs2149328	0.83[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs35037562	0.94[ASN][1000 genomes]
rs35991470	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs55909633	0.92[ASN][1000 genomes]
rs7981409	0.83[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs7983394	0.92[EUR][1000 genomes]
rs9316631	0.98[EUR][1000 genomes]
rs9527109	0.90[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs9536467	0.81[AFR][1000 genomes];0.87[AMR][1000 genomes];0.98[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1044137	chr13:54124103-54521120	Enhancers Weak transcription Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
2	nsv541777	chr13:54124103-54521120	Enhancers Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Weak transcription Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
3	nsv527779	chr13:54125624-54249153	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:54162800-54164400	Weak transcription	HUES48 Cell Line	embryonic stem cell
2	chr13:54163800-54166200	Enhancers	ES-I3 Cell Line	embryonic stem cell

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dbSNP/dbVar ID: rs12345 /nsv7879
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chromosomal regions: chr1:12345-34567

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