Variant report

Variant	rs60198495
Chromosome Location	chr12:116984724-116984725
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr12:116967310..116968928-chr12:116982410..116984737,2	MCF-7	breast:

Extended variants
information (count: 3 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv899540	chr12:116920503-116999861	Active TSS Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Strong transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	23 gene(s)	inside rSNPs	diseases
2	esv3451036	chr12:116983919-116985817	Enhancers Flanking Active TSS Weak transcription Bivalent Enhancer	TF binding region Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	n/a
3	nsv46862	chr12:116984725-116984728	Weak transcription Enhancers	Chromatin interactive region	n/a	n/a	n/a

No data

Chromatin state (count:41 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:116973000-116986000	Weak transcription	Aorta	Aorta
2	chr12:116977600-116985400	Weak transcription	Placenta	Placenta
3	chr12:116977800-116984800	Weak transcription	Primary neutrophils fromperipheralblood	blood
4	chr12:116978000-116985800	Weak transcription	Sigmoid Colon	Sigmoid Colon
5	chr12:116978200-116985800	Weak transcription	Psoas Muscle	Psoas
6	chr12:116978200-116989400	Weak transcription	Esophagus	oesophagus
7	chr12:116978400-116985000	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
8	chr12:116978400-116985800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
9	chr12:116980600-116985000	Weak transcription	Skeletal Muscle Male	skeletal muscle
10	chr12:116980800-116985800	Weak transcription	Right Ventricle	heart
11	chr12:116980800-116985800	Weak transcription	NH-A	brain
12	chr12:116981000-116985200	Weak transcription	Skeletal Muscle Female	skeletal muscle
13	chr12:116981000-116985400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
14	chr12:116981000-116985800	Weak transcription	Fetal Kidney	kidney
15	chr12:116981200-116985000	Weak transcription	Monocytes-CD14+_RO01746	blood
16	chr12:116981200-116985400	Weak transcription	Fetal Thymus	thymus
17	chr12:116981600-116984800	Weak transcription	Primary monocytes fromperipheralblood	blood
18	chr12:116981600-116986000	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
19	chr12:116982000-116986000	Weak transcription	Duodenum Smooth Muscle	Duodenum
20	chr12:116982400-116985200	Weak transcription	Colonic Mucosa	Colon
21	chr12:116982400-116986000	Weak transcription	Rectal Smooth Muscle	rectum
22	chr12:116982800-116985800	Weak transcription	Fetal Lung	lung
23	chr12:116983200-116985600	Weak transcription	Adipose Nuclei	Adipose
24	chr12:116983200-116986800	Enhancers	K562	blood
25	chr12:116983400-116985800	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
26	chr12:116983600-116985600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
27	chr12:116983600-116985800	Weak transcription	Ovary	ovary
28	chr12:116983600-116986000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
29	chr12:116983800-116985200	Weak transcription	GM12878-XiMat	blood
30	chr12:116983800-116985600	Weak transcription	Fetal Brain Female	brain
31	chr12:116983800-116986200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
32	chr12:116984000-116985600	Weak transcription	HUES6 Cell Line	embryonic stem cell
33	chr12:116984200-116985200	Weak transcription	Fetal Muscle Trunk	muscle
34	chr12:116984200-116985400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
35	chr12:116984200-116985400	Weak transcription	Colon Smooth Muscle	Colon
36	chr12:116984200-116986200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
37	chr12:116984200-116996800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
38	chr12:116984200-116997000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
39	chr12:116984400-116984800	Enhancers	Primary hematopoietic stem cells short term culture	blood
40	chr12:116984400-116985200	Weak transcription	Primary hematopoietic stem cells	blood
41	chr12:116984400-116985800	Weak transcription	Breast Myoepithelial Primary Cells	Breast

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