Variant report

Variant	rs60200610
Chromosome Location	chr11:64216802-64216803
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:14)
LncRNA
region (count:1)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:14 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr11:64216755..64217704-chr11:64424374..64424946,2	K562	blood:
2	chr11:64216411..64217094-chr11:64509920..64510560,2	K562	blood:
3	11:64216678-64218674..11:64426650-64437729	K562	blood:
4	chr11:64125330..64128537-chr11:64215213..64218115,3	MCF-7	breast:
5	chr11:64126708..64127588-chr11:64216678..64217469,2	MCF-7	breast:
6	11:64216678-64218674..11:64402707-64415880	Hela-S3	cervix:
7	chr11:64071995..64074529-chr11:64215478..64217997,2	K562	blood:
8	11:64216678-64218674..11:64415880-64426617	K562	blood:
9	chr11:64122365..64123400-chr11:64216043..64217247,4	MCF-7	breast:
10	11:64216678-64218674..11:64523887-64530985	Hela-S3	cervix:
11	11:64216678-64218674..11:64501239-64517861	K562	blood:
12	11:64216678-64218674..11:64356433-64395036	K562	blood:
13	chr11:64124989..64126699-chr11:64216058..64218143,2	K562	blood:
14	chr11:64216673..64217664-chr11:64417045..64417628,3	K562	blood:

(count:1 , 50 per page) page: 1

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-AP003774.4.1-3	chr11:64216529-64217124	NR_073177

No data

Variant related genes	Relation type
ENSG00000197891	Chromatin interaction
ENSG00000237410	Chromatin interaction
ENSG00000110076	Chromatin interaction
ENSG00000068831	Chromatin interaction
ENSG00000162302	Chromatin interaction
ENSG00000068976	Chromatin interaction
ENSG00000173153	Chromatin interaction
ENSG00000168071	Chromatin interaction

Extended variants
information (count: 6 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:4)

rs_ID	r²[population]
rs12286249	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs539810	0.82[ASN][1000 genomes]
rs59817450	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs60630604	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832187	chr11:64121969-64312300	Genic enhancers Weak transcription Enhancers Flanking Active TSS Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	50 gene(s)	inside rSNPs	diseases
2	nsv555194	chr11:64189110-64238023	Active TSS Bivalent Enhancer Enhancers Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:119 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:64215000-64218200	Flanking Active TSS	Monocytes-CD14+_RO01746	blood
2	chr11:64215200-64217000	Bivalent Enhancer	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
3	chr11:64215200-64217000	Flanking Active TSS	Primary hematopoietic stem cells short term culture	blood
4	chr11:64215200-64217200	Bivalent Enhancer	H9 Derived Neuron Cultured Cells	ES cell derived
5	chr11:64215200-64217200	Flanking Active TSS	Liver	Liver
6	chr11:64215200-64217400	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
7	chr11:64215200-64217400	Flanking Active TSS	Fetal Brain Female	brain
8	chr11:64215200-64217600	Flanking Active TSS	Primary monocytes fromperipheralblood	blood
9	chr11:64215200-64217600	Enhancers	Fetal Brain Male	brain
10	chr11:64215400-64217000	Flanking Bivalent TSS/Enh	Foreskin Fibroblast Primary Cells skin01	Skin
11	chr11:64215400-64217200	Flanking Active TSS	Primary neutrophils fromperipheralblood	blood
12	chr11:64215400-64217200	Flanking Active TSS	Primary B cells from cord blood	blood
13	chr11:64215400-64217200	Flanking Active TSS	Primary B cells from peripheral blood	blood
14	chr11:64215400-64217200	Flanking Active TSS	Primary hematopoietic stem cells	blood
15	chr11:64215400-64217200	Flanking Active TSS	Adipose Nuclei	Adipose
16	chr11:64215400-64217200	Flanking Active TSS	Brain Anterior Caudate	brain
17	chr11:64215400-64217200	Flanking Active TSS	Skeletal Muscle Male	skeletal muscle
18	chr11:64215400-64217400	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Female	--
19	chr11:64215400-64217400	Flanking Bivalent TSS/Enh	Foreskin Fibroblast Primary Cells skin02	Skin
20	chr11:64215600-64217000	Bivalent/Poised TSS	HUES64 Cell Line	embryonic stem cell
21	chr11:64215600-64217000	Flanking Active TSS	GM12878-XiMat	blood
22	chr11:64215600-64217200	Flanking Active TSS	Rectal Mucosa Donor 29	rectum
23	chr11:64215600-64217200	Flanking Active TSS	Rectal Mucosa Donor 31	rectum
24	chr11:64215600-64217200	Flanking Active TSS	Skeletal Muscle Female	skeletal muscle
25	chr11:64215600-64217200	Flanking Active TSS	Hela-S3	cervix
26	chr11:64215800-64217000	Transcr. at gene 5' and 3'	iPS DF 19.11 Cell Line	embryonic stem cell
27	chr11:64215800-64217000	Enhancers	Fetal Heart	heart
28	chr11:64215800-64217000	Enhancers	Sigmoid Colon	Sigmoid Colon
29	chr11:64215800-64217200	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
30	chr11:64215800-64217200	Flanking Active TSS	Colonic Mucosa	Colon
31	chr11:64215800-64217200	Flanking Active TSS	Duodenum Smooth Muscle	Duodenum
32	chr11:64215800-64217200	Flanking Active TSS	Pancreas	Pancrea
33	chr11:64215800-64217200	Flanking Active TSS	A549	lung
34	chr11:64215800-64217200	Enhancers	HMEC	breast
35	chr11:64215800-64217400	Flanking Active TSS	Brain Hippocampus Middle	brain
36	chr11:64215800-64217600	Enhancers	Gastric	stomach
37	chr11:64216000-64217200	Bivalent/Poised TSS	ES-WA7 Cell Line	embryonic stem cell
38	chr11:64216000-64217200	Flanking Active TSS	Primary T helper cells fromperipheralblood	blood
39	chr11:64216000-64217200	Enhancers	Esophagus	oesophagus
40	chr11:64216000-64217200	Flanking Active TSS	Placenta	Placenta
41	chr11:64216000-64217400	Flanking Active TSS	Duodenum Mucosa	Duodenum
42	chr11:64216000-64218000	Enhancers	Spleen	Spleen
43	chr11:64216200-64217000	Flanking Bivalent TSS/Enh	Fetal Intestine Large	intestine
44	chr11:64216200-64217000	Flanking Bivalent TSS/Enh	Fetal Muscle Leg	muscle
45	chr11:64216200-64217200	Bivalent/Poised TSS	ES-I3 Cell Line	embryonic stem cell
46	chr11:64216200-64217200	Flanking Bivalent TSS/Enh	H1 Cell Line	embryonic stem cell
47	chr11:64216200-64217200	Flanking Active TSS	Primary T cells from cord blood	blood
48	chr11:64216200-64217200	Flanking Bivalent TSS/Enh	Primary T cells fromperipheralblood	blood
49	chr11:64216200-64217200	Flanking Active TSS	Primary T helper naive cells from peripheral blood	blood
50	chr11:64216200-64217200	Flanking Bivalent TSS/Enh	Primary T regulatory cells fromperipheralblood	blood

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