Variant report

Variant	rs60204765
Chromosome Location	chr3:156588746-156588747
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 20 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs10513499	0.92[EUR][1000 genomes]
rs16826825	0.88[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs16826869	0.88[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs16826877	0.88[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs2101167	0.92[EUR][1000 genomes]
rs55687414	0.92[EUR][1000 genomes]
rs55726754	0.92[EUR][1000 genomes]
rs55928997	0.88[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs55951025	0.88[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs56126252	0.92[EUR][1000 genomes]
rs56413335	0.88[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs58158797	0.88[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs59229493	0.88[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs59870247	0.92[EUR][1000 genomes]
rs60561257	0.92[EUR][1000 genomes]
rs73873740	0.88[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs73873745	0.92[EUR][1000 genomes]
rs73873746	0.92[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv877685	chr3:156444383-156611676	Enhancers Active TSS Weak transcription Flanking Active TSS Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	48 gene(s)	inside rSNPs	diseases
2	nsv829765	chr3:156568263-156718496	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Strong transcription Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs60204765	LINC00886	cis	Thyroid	GTEx

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:156586400-156591400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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