Variant report

Variant	rs60205152
Chromosome Location	chr15:40438574-40438575
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr15:40437357..40438931-chr15:40442265..40443877,2	K562	blood:
2	chr15:40433017..40434874-chr15:40436940..40438586,2	MCF-7	breast:

Extended variants
information (count: 7 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:3)

rs_ID	r²[population]
rs16970425	1.00[AMR][1000 genomes]
rs473965	0.80[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7169393	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv530816	chr15:40003136-40586792	Bivalent Enhancer Strong transcription Enhancers Weak transcription Flanking Bivalent TSS/Enh Flanking Active TSS Genic enhancers ZNF genes & repeats Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	63 gene(s)	inside rSNPs	diseases
2	esv3423229	chr15:40417126-40447686	Enhancers Flanking Active TSS Weak transcription Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
3	esv3500491	chr15:40417175-40446353	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
4	esv3500492	chr15:40417175-40446353	Weak transcription Flanking Active TSS Enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Active TSS	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:23 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:40428600-40442200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
2	chr15:40437400-40442200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
3	chr15:40437800-40439200	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
4	chr15:40437800-40439200	Enhancers	HMEC	breast
5	chr15:40438000-40438600	Enhancers	ES-I3 Cell Line	embryonic stem cell
6	chr15:40438000-40438600	Enhancers	HSMMtube	muscle
7	chr15:40438000-40438800	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
8	chr15:40438000-40438800	Enhancers	Placenta Amnion	Placenta Amnion
9	chr15:40438000-40438800	Enhancers	A549	lung
10	chr15:40438000-40439200	Enhancers	NHEK	skin
11	chr15:40438000-40439400	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
12	chr15:40438000-40439400	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
13	chr15:40438200-40438600	Enhancers	HUES6 Cell Line	embryonic stem cell
14	chr15:40438200-40438600	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
15	chr15:40438200-40438600	Enhancers	NH-A	brain
16	chr15:40438200-40438600	Enhancers	Osteobl	bone
17	chr15:40438200-40438800	Enhancers	ES-WA7 Cell Line	embryonic stem cell
18	chr15:40438200-40438800	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
19	chr15:40438200-40438800	Enhancers	Muscle Satellite Cultured Cells	--
20	chr15:40438200-40438800	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
21	chr15:40438200-40438800	Enhancers	HSMM	muscle
22	chr15:40438400-40442200	Weak transcription	Hela-S3	cervix
23	chr15:40438400-40446800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived

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