Variant report

Variant	rs602071
Chromosome Location	chr6:33681874-33681875
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr6:33680227..33683293-chr6:33684221..33688907,5	K562	blood:
2	chr6:33679403..33680968-chr6:33681230..33682838,3	K562	blood:
3	chr6:33677771..33685795-chr6:33753004..33758704,10	MCF-7	breast:
4	chr6:33680227..33683145-chr6:33684696..33687420,2	K562	blood:
5	chr6:33681000..33683302-chr6:33729065..33730662,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000137288	Chromatin interaction
ENSG00000161904	Chromatin interaction

Extended variants
information (count: 6 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:3)

rs_ID	r²[population]
rs4640882	1.00[ASN][1000 genomes]
rs538164	1.00[CEU][hapmap];0.85[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73744675	0.83[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv830638	chr6:33551202-33711346	Enhancers Weak transcription Active TSS Flanking Active TSS Genic enhancers Bivalent/Poised TSS Strong transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA	46 gene(s)	inside rSNPs	diseases
2	nsv830639	chr6:33592022-33711346	Strong transcription Enhancers Flanking Active TSS Weak transcription Transcr. at gene 5' and 3' Active TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	30 gene(s)	inside rSNPs	diseases
3	nsv885772	chr6:33638180-33767727	Bivalent Enhancer Genic enhancers Strong transcription Enhancers Weak transcription Transcr. at gene 5' and 3' Flanking Active TSS Active TSS Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA	28 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:53 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:33679800-33685000	Weak transcription	Lung	lung
2	chr6:33679800-33685600	Weak transcription	Placenta	Placenta
3	chr6:33680000-33682000	Weak transcription	Fetal Intestine Large	intestine
4	chr6:33680000-33682200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
5	chr6:33680000-33682200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
6	chr6:33680000-33683000	Weak transcription	Stomach Mucosa	stomach
7	chr6:33680000-33683800	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
8	chr6:33680000-33683800	Weak transcription	Rectal Mucosa Donor 31	rectum
9	chr6:33680000-33684000	Weak transcription	H1 Cell Line	embryonic stem cell
10	chr6:33680000-33684000	Weak transcription	HUES6 Cell Line	embryonic stem cell
11	chr6:33680000-33684000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
12	chr6:33680000-33684000	Weak transcription	Esophagus	oesophagus
13	chr6:33680000-33684000	Weak transcription	Gastric	stomach
14	chr6:33680000-33684000	Weak transcription	Left Ventricle	heart
15	chr6:33680000-33684000	Weak transcription	HMEC	breast
16	chr6:33680000-33684000	Weak transcription	NHEK	skin
17	chr6:33680000-33684200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
18	chr6:33680000-33684200	Weak transcription	HUES64 Cell Line	embryonic stem cell
19	chr6:33680000-33684200	Weak transcription	Fetal Lung	lung
20	chr6:33680000-33684200	Weak transcription	Sigmoid Colon	Sigmoid Colon
21	chr6:33680000-33684400	Weak transcription	iPS-15b Cell Line	embryonic stem cell
22	chr6:33680000-33684400	Weak transcription	iPS-20b Cell Line	embryonic stem cell
23	chr6:33680000-33684600	Weak transcription	Fetal Brain Male	brain
24	chr6:33680000-33684600	Weak transcription	Fetal Kidney	kidney
25	chr6:33680000-33684800	Weak transcription	H9 Cell Line	embryonic stem cell
26	chr6:33680000-33684800	Weak transcription	Colon Smooth Muscle	Colon
27	chr6:33680000-33684800	Weak transcription	Rectal Smooth Muscle	rectum
28	chr6:33680000-33684800	Weak transcription	NHLF	lung
29	chr6:33680000-33685000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
30	chr6:33680000-33685000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
31	chr6:33680000-33685000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
32	chr6:33680000-33685000	Weak transcription	Duodenum Smooth Muscle	Duodenum
33	chr6:33680000-33685000	Weak transcription	Skeletal Muscle Male	skeletal muscle
34	chr6:33680000-33685000	Weak transcription	Skeletal Muscle Female	skeletal muscle
35	chr6:33680000-33685200	Weak transcription	Right Atrium	heart
36	chr6:33680000-33686000	Weak transcription	Right Ventricle	heart
37	chr6:33680000-33689400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
38	chr6:33680000-33690000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
39	chr6:33680000-33690200	Weak transcription	Psoas Muscle	Psoas
40	chr6:33680000-33693000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
41	chr6:33680000-33695200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
42	chr6:33680000-33695800	Weak transcription	Spleen	Spleen
43	chr6:33680000-33696200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
44	chr6:33680000-33698400	Weak transcription	Placenta Amnion	Placenta Amnion
45	chr6:33680000-33705000	Weak transcription	Brain Angular Gyrus	brain
46	chr6:33680200-33682000	Weak transcription	Primary B cells from peripheral blood	blood
47	chr6:33680200-33682200	Weak transcription	Primary hematopoietic stem cells	blood
48	chr6:33680200-33682200	Weak transcription	Liver	Liver
49	chr6:33680200-33684200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
50	chr6:33680200-33685200	Weak transcription	Brain Hippocampus Middle	brain

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