Variant report

Variant	rs60219343
Chromosome Location	chr10:26451262-26451263
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 7 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:6)

rs_ID	r²[population]
rs33968748	1.00[AMR][1000 genomes]
rs57004262	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs57298521	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs58554934	1.00[AMR][1000 genomes]
rs7074819	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7904959	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv894975	chr10:26343356-27014467	Strong transcription Flanking Active TSS Enhancers Weak transcription Flanking Bivalent TSS/Enh Genic enhancers Active TSS Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	25 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:26440800-26473400	Weak transcription	Pancreatic Islets	Pancreatic Islet
2	chr10:26447000-26453400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
3	chr10:26449400-26455200	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
4	chr10:26450200-26452000	Enhancers	iPS-18 Cell Line	embryonic stem cell
5	chr10:26450400-26452200	Enhancers	HUES64 Cell Line	embryonic stem cell
6	chr10:26450800-26452000	Enhancers	iPS-15b Cell Line	embryonic stem cell
7	chr10:26451000-26451600	Weak transcription	H9 Cell Line	embryonic stem cell
8	chr10:26451000-26452000	Enhancers	HUES6 Cell Line	embryonic stem cell
9	chr10:26451200-26456600	Weak transcription	HUES48 Cell Line	embryonic stem cell

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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