The 2.0 version of rSNPBase

Variant report

Variant rs60220474
Chromosome Location chr1:184558604-184558605
allele A/G
Outlinks Ensembl   UCSC
Chromatin state (count:44 , 50 per page) page: 1
No. Chromosome Location Chromatin state Cell line Tissue
1 chr1:184536000-184559000 Weak transcription Foreskin Keratinocyte Primary Cells skin03 Skin
2 chr1:184536000-184559000 Weak transcription NHEK skin
3 chr1:184536800-184559200 Weak transcription Foreskin Keratinocyte Primary Cells skin02 Skin
4 chr1:184537200-184559000 Weak transcription Breast variant Human Mammary Epithelial Cells (vHMEC) Breast
5 chr1:184538000-184559400 Weak transcription H1 BMP4 Derived Trophoblast Cultured Cells ES cell derived
6 chr1:184538400-184559000 Weak transcription Right Atrium heart
7 chr1:184546200-184563800 Weak transcription ES-UCSF4 Cell Line embryonic stem cell
8 chr1:184546200-184566600 Weak transcription Left Ventricle heart
9 chr1:184547800-184580000 Weak transcription Colon Smooth Muscle Colon
10 chr1:184549400-184564600 Weak transcription NHDF-Ad bronchial
11 chr1:184553200-184566200 Weak transcription hESC Derived CD56+ Ectoderm Cultured Cells ES cell derived
12 chr1:184553200-184566600 Weak transcription Fetal Stomach stomach
13 chr1:184553600-184566200 Weak transcription Primary hematopoietic stem cells G-CSF-mobilized Female --
14 chr1:184553600-184566200 Weak transcription Primary hematopoietic stem cells G-CSF-mobilized Male --
15 chr1:184555400-184561800 Weak transcription hESC Derived CD184+ Endoderm Cultured Cells ES cell derived
16 chr1:184556800-184559800 Enhancers Duodenum Mucosa Duodenum
17 chr1:184556800-184559800 Enhancers Small Intestine intestine
18 chr1:184557000-184559400 Weak transcription Breast Myoepithelial Primary Cells Breast
19 chr1:184557000-184566400 Weak transcription Psoas Muscle Psoas
20 chr1:184557000-184566400 Weak transcription Skeletal Muscle Male skeletal muscle
21 chr1:184557200-184566400 Weak transcription Skeletal Muscle Female skeletal muscle
22 chr1:184557200-184574000 Weak transcription Fetal Muscle Trunk muscle
23 chr1:184557200-184591600 Weak transcription Aorta Aorta
24 chr1:184557800-184559200 Enhancers Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells embryonic stem cell
25 chr1:184557800-184559800 Enhancers Foreskin Melanocyte Primary Cells skin03 Skin
26 chr1:184558000-184559200 Enhancers Foreskin Melanocyte Primary Cells skin01 Skin
27 chr1:184558000-184559200 Enhancers Right Ventricle heart
28 chr1:184558000-184559400 Enhancers Rectal Mucosa Donor 31 rectum
29 chr1:184558000-184559800 Enhancers Sigmoid Colon Sigmoid Colon
30 chr1:184558000-184560400 Enhancers Stomach Mucosa stomach
31 chr1:184558000-184560600 Enhancers Fetal Intestine Large intestine
32 chr1:184558000-184560600 Enhancers Fetal Intestine Small intestine
33 chr1:184558200-184559400 Enhancers Duodenum Smooth Muscle Duodenum
34 chr1:184558400-184559200 Enhancers Rectal Mucosa Donor 29 rectum
35 chr1:184558400-184560000 Enhancers Placenta Placenta
36 chr1:184558400-184561800 Weak transcription A549 lung
37 chr1:184558600-184558800 Enhancers Fetal Lung lung
38 chr1:184558600-184559600 Enhancers Ganglion Eminence derived primary cultured neurospheres brain
39 chr1:184558600-184560200 Enhancers Liver Liver
40 chr1:184558600-184564600 Weak transcription IMR90 fetal lung fibroblasts Cell Line lung
41 chr1:184558600-184564800 Weak transcription H1 Derived Neuronal Progenitor Cultured Cells ES cell derived
42 chr1:184558600-184566400 Weak transcription Fetal Muscle Leg muscle
43 chr1:184558600-184568000 Weak transcription Pancreas Pancrea
44 chr1:184558600-184572600 Weak transcription Lung lung

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Last update: Aug 31, 2015