Variant report

Variant	rs6022967
Chromosome Location	chr20:52727865-52727866
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:11)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:11 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr17:56707605..56709236-chr20:52726856..52728529,2	MCF-7	breast:
2	chr17:56736321..56738217-chr20:52727383..52729150,2	MCF-7	breast:
3	chr20:52726762..52728695-chrX:19411841..19413360,2	MCF-7	breast:
4	chr20:45986061..45987705-chr20:52725201..52728187,3	MCF-7	breast:
5	chr20:52726539..52728256-chr7:150811735..150814206,2	MCF-7	breast:
6	chr20:52567558..52570240-chr20:52726705..52729321,2	MCF-7	breast:
7	chr17:57921552..57924477-chr20:52726463..52728526,2	MCF-7	breast:
8	chr20:52482302..52483839-chr20:52727165..52730009,2	MCF-7	breast:
9	chr17:59480804..59482388-chr20:52726922..52728765,2	MCF-7	breast:
10	chr12:46122226..46124327-chr20:52727824..52730094,2	MCF-7	breast:
11	chr17:56706370..56714481-chr20:52725604..52746501,43	MCF-7	breast:

No data

Variant related genes	Relation type
ENSG00000189079	Chromatin interaction
ENSG00000212195	Chromatin interaction
ENSG00000202077	Chromatin interaction
ENSG00000133612	Chromatin interaction

Extended variants
information (count: 3 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:1)

rs_ID	r²[population]
rs6013892	0.91[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv586224	chr20:52474850-53279490	Flanking Active TSS Weak transcription Enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Active TSS Bivalent/Poised TSS Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	338 gene(s)	inside rSNPs	diseases
2	nsv586280	chr20:52718555-52758416	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Genic enhancers Active TSS Bivalent Enhancer Bivalent/Poised TSS	Chromatin interactive region	84 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:23 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr20:52724400-52730400	Weak transcription	Sigmoid Colon	Sigmoid Colon
2	chr20:52724600-52728800	Weak transcription	Esophagus	oesophagus
3	chr20:52724600-52729800	Weak transcription	Duodenum Mucosa	Duodenum
4	chr20:52724800-52729600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
5	chr20:52724800-52731400	Weak transcription	Stomach Mucosa	stomach
6	chr20:52725000-52729000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
7	chr20:52725000-52740200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
8	chr20:52725200-52728200	Weak transcription	Liver	Liver
9	chr20:52725200-52732000	Enhancers	HepG2	liver
10	chr20:52726600-52730400	Enhancers	Rectal Mucosa Donor 31	rectum
11	chr20:52727000-52729600	Weak transcription	Rectal Mucosa Donor 29	rectum
12	chr20:52727000-52732000	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
13	chr20:52727200-52728800	Weak transcription	Small Intestine	intestine
14	chr20:52727200-52729000	Weak transcription	Fetal Intestine Large	intestine
15	chr20:52727400-52728000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
16	chr20:52727400-52728000	Weak transcription	Fetal Intestine Small	intestine
17	chr20:52727400-52728200	Weak transcription	A549	lung
18	chr20:52727400-52730000	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
19	chr20:52727400-52731800	Weak transcription	Osteobl	bone
20	chr20:52727600-52728200	ZNF genes & repeats	Foreskin Keratinocyte Primary Cells skin02	Skin
21	chr20:52727600-52728800	Weak transcription	NHEK	skin
22	chr20:52727800-52728000	Weak transcription	H9 Cell Line	embryonic stem cell
23	chr20:52727800-52730000	Weak transcription	Placenta	Placenta

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