Variant report

Variant	rs6023185
Chromosome Location	chr20:53006729-53006730
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr20:53006460..53007979-chr20:53012099..53014054,2	MCF-7	breast:
2	chr20:53001713..53004183-chr20:53005864..53007404,2	K562	blood:
3	chr20:52837790..52839838-chr20:53004656..53006730,2	MCF-7	breast:
4	chr20:53004386..53007299-chr20:53027791..53029630,2	MCF-7	breast:

Extended variants
information (count: 60 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:57)

rs_ID	r²[population]
rs1007393	0.87[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs1014808	0.82[ASN][1000 genomes]
rs1321464	0.85[JPT][hapmap]
rs1321465	0.85[JPT][hapmap];0.82[AMR][1000 genomes]
rs1321468	0.85[JPT][hapmap]
rs1358806	0.93[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs1358807	0.87[ASN][1000 genomes]
rs1407043	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.95[AFR][1000 genomes];0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1590206	0.87[ASN][1000 genomes]
rs16999597	1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];1.00[YRI][hapmap];0.97[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1923118	0.93[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs28406117	0.83[ASN][1000 genomes]
rs28429972	0.84[ASN][1000 genomes]
rs2870329	0.93[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs56881371	0.86[ASN][1000 genomes]
rs59924072	0.84[ASN][1000 genomes]
rs6013987	0.83[ASN][1000 genomes]
rs6013989	0.83[ASN][1000 genomes]
rs6013997	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.84[YRI][hapmap];0.81[AMR][1000 genomes];0.93[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6013999	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs6014003	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs6014004	0.94[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs6014005	1.00[CEU][hapmap];0.93[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs6014011	0.90[JPT][hapmap]
rs6023153	0.86[ASN][1000 genomes]
rs6023154	0.86[ASN][1000 genomes]
rs6023155	0.88[ASN][1000 genomes]
rs6023156	0.88[ASN][1000 genomes]
rs6023158	0.82[CHB][hapmap];0.90[JPT][hapmap];0.88[ASN][1000 genomes]
rs6023163	0.84[ASN][1000 genomes]
rs6023164	0.81[AFR][1000 genomes];0.84[ASN][1000 genomes]
rs6023178	0.84[ASN][1000 genomes]
rs6023179	0.84[ASN][1000 genomes]
rs6023180	0.88[AFR][1000 genomes];0.89[AMR][1000 genomes];0.89[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs6023181	1.00[CEU][hapmap];0.81[JPT][hapmap];0.90[YRI][hapmap];0.94[AFR][1000 genomes];0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs6023183	0.88[ASN][1000 genomes]
rs6023189	0.98[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs6023192	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs6023193	0.93[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs6023197	0.81[AFR][1000 genomes];0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs6023203	1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs6023227	0.81[JPT][hapmap]
rs6097934	0.82[CHB][hapmap];0.81[JPT][hapmap];0.86[ASN][1000 genomes]
rs6097938	0.83[ASN][1000 genomes]
rs6097939	0.87[ASN][1000 genomes]
rs6097940	0.86[ASN][1000 genomes]
rs6097941	0.86[ASN][1000 genomes]
rs6097945	0.82[ASN][1000 genomes]
rs6097946	0.82[ASN][1000 genomes]
rs6097955	0.98[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs6097957	0.93[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs6097963	1.00[CHB][hapmap];0.95[JPT][hapmap];0.94[ASN][1000 genomes]
rs6097964	0.93[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs6097967	0.93[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs73624107	0.83[ASN][1000 genomes]
rs73624108	0.84[ASN][1000 genomes]
rs73624110	0.84[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv586224	chr20:52474850-53279490	Flanking Active TSS Weak transcription Enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Active TSS Bivalent/Poised TSS Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	338 gene(s)	inside rSNPs	diseases
2	nsv834011	chr20:52858341-53086042	Enhancers ZNF genes & repeats Weak transcription Bivalent Enhancer Flanking Active TSS Active TSS	Chromatin interactive region lncRNA	55 gene(s)	inside rSNPs	diseases
3	nsv834012	chr20:52921007-53097177	Flanking Active TSS Weak transcription Bivalent/Poised TSS Enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	43 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr20:53002600-53017600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
2	chr20:53005600-53006800	Enhancers	Adipose Nuclei	Adipose
3	chr20:53005800-53006800	Bivalent Enhancer	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
4	chr20:53005800-53007200	Enhancers	Fetal Muscle Leg	muscle

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