Variant report

Variant	rs6023323
Chromosome Location	chr20:53124595-53124596
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 18 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs13042185	0.83[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs13044898	0.85[TSI][hapmap]
rs2297153	1.00[ASN][1000 genomes]
rs34433522	0.87[ASN][1000 genomes]
rs34803565	1.00[ASN][1000 genomes]
rs36060321	0.88[EUR][1000 genomes]
rs6014032	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[ASN][1000 genomes]
rs6023274	1.00[CHB][hapmap];0.87[ASN][1000 genomes]
rs6023278	1.00[CHB][hapmap];0.87[ASN][1000 genomes]
rs6023291	1.00[CHB][hapmap];1.00[CHD][hapmap];0.92[TSI][hapmap];0.83[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs6023295	1.00[ASN][1000 genomes]
rs6023307	1.00[CHB][hapmap];0.83[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs6023309	1.00[CHB][hapmap];0.92[YRI][hapmap];0.84[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs6091891	0.85[TSI][hapmap]
rs6091895	1.00[ASN][1000 genomes]
rs6098009	1.00[CHB][hapmap];0.85[TSI][hapmap];0.87[ASN][1000 genomes]
rs922398	0.85[TSI][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv586224	chr20:52474850-53279490	Flanking Active TSS Weak transcription Enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Active TSS Bivalent/Poised TSS Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	338 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:13 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr20:53102400-53127200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
2	chr20:53108200-53126600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
3	chr20:53108200-53127200	Weak transcription	Ovary	ovary
4	chr20:53111200-53132400	Weak transcription	Skeletal Muscle Male	skeletal muscle
5	chr20:53111600-53127400	Weak transcription	Skeletal Muscle Female	skeletal muscle
6	chr20:53115000-53130600	Weak transcription	Fetal Brain Female	brain
7	chr20:53116400-53126200	Weak transcription	Breast Myoepithelial Primary Cells	Breast
8	chr20:53116400-53127200	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
9	chr20:53118800-53132600	Weak transcription	NHDF-Ad	bronchial
10	chr20:53119600-53137000	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
11	chr20:53120800-53129200	Weak transcription	Aorta	Aorta
12	chr20:53120800-53148800	Weak transcription	Left Ventricle	heart
13	chr20:53121200-53126600	Weak transcription	Cortex derived primary cultured neurospheres	brain

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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