Variant report

Variant	rs6023379
Chromosome Location	chr20:53200349-53200350
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr20:53200153..53202638-chr20:53204182..53206369,3	MCF-7	breast:
2	chr20:53199778..53200373-chr22:28995264..28995764,2	MCF-7	breast:

Extended variants
information (count: 43 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:39)

rs_ID	r²[population]
rs10485784	0.87[CEU][hapmap];0.83[EUR][1000 genomes]
rs13040223	0.81[YRI][hapmap]
rs13040265	0.84[YRI][hapmap]
rs16999805	0.87[YRI][hapmap]
rs17327539	0.83[EUR][1000 genomes]
rs2169707	0.88[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs28663252	0.83[EUR][1000 genomes]
rs55960128	0.83[EUR][1000 genomes]
rs56371656	0.81[EUR][1000 genomes]
rs58298733	0.85[EUR][1000 genomes]
rs6014066	1.00[CEU][hapmap];0.85[YRI][hapmap];0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6014067	0.88[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs6014073	0.88[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs6014074	0.88[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs6014075	0.88[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs6014076	0.88[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs6014077	0.83[AMR][1000 genomes]
rs6014078	0.81[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs6014080	0.86[EUR][1000 genomes]
rs6023382	1.00[CEU][hapmap];0.84[EUR][1000 genomes]
rs6023383	0.84[EUR][1000 genomes]
rs6023384	0.88[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs6023385	0.88[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs6023386	0.86[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs6023387	0.88[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs6023388	0.88[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs6023394	0.81[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs6023397	0.81[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs6023398	0.81[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs6023401	0.86[EUR][1000 genomes]
rs6023403	0.86[EUR][1000 genomes]
rs6091925	0.98[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs6098093	0.87[CEU][hapmap];0.81[EUR][1000 genomes]
rs6098099	0.83[EUR][1000 genomes]
rs6098103	0.86[EUR][1000 genomes]
rs6098105	0.86[EUR][1000 genomes]
rs67907005	0.83[EUR][1000 genomes]
rs7269966	0.86[EUR][1000 genomes]
rs73140147	0.83[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv586224	chr20:52474850-53279490	Flanking Active TSS Weak transcription Enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Active TSS Bivalent/Poised TSS Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	338 gene(s)	inside rSNPs	diseases
2	nsv1067497	chr20:53146241-53751820	Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Strong transcription ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	66 gene(s)	inside rSNPs	diseases
3	nsv1064144	chr20:53175264-53750137	Enhancers Bivalent Enhancer Weak transcription ZNF genes & repeats Strong transcription Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	66 gene(s)	inside rSNPs	diseases
4	nsv544302	chr20:53175264-53750137	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Genic enhancers ZNF genes & repeats Active TSS Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	66 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:0 , 50 per page) page:

No data

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