Variant report

Variant	rs6023624
Chromosome Location	chr20:53444338-53444339
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 20 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs1512065	0.95[EUR][1000 genomes]
rs2025128	0.86[EUR][1000 genomes]
rs2025129	0.86[EUR][1000 genomes]
rs2048504	1.00[CEU][hapmap];0.94[EUR][1000 genomes]
rs2063519	0.86[EUR][1000 genomes]
rs431022	0.84[CEU][hapmap]
rs4811538	0.96[EUR][1000 genomes]
rs6014185	0.93[EUR][1000 genomes]
rs6023625	0.90[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs6023640	0.88[EUR][1000 genomes]
rs6023645	0.94[CEU][hapmap];0.82[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs6023649	0.82[EUR][1000 genomes]
rs6023655	0.82[CEU][hapmap];0.81[EUR][1000 genomes]
rs6064117	0.86[EUR][1000 genomes]
rs6069016	0.81[EUR][1000 genomes]
rs912507	0.89[CEU][hapmap];0.92[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1067497	chr20:53146241-53751820	Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Strong transcription ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	66 gene(s)	inside rSNPs	diseases
2	nsv1064144	chr20:53175264-53750137	Enhancers Bivalent Enhancer Weak transcription ZNF genes & repeats Strong transcription Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	66 gene(s)	inside rSNPs	diseases
3	nsv544302	chr20:53175264-53750137	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Genic enhancers ZNF genes & repeats Active TSS Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	66 gene(s)	inside rSNPs	diseases
4	nsv1060552	chr20:53234716-53655115	Bivalent Enhancer Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	54 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr20:53444000-53444400	Enhancers	Fetal Stomach	stomach

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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