Variant report

Variant	rs60237109
Chromosome Location	chr6:146623777-146623778
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 17 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs2143326	0.80[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs2143327	0.80[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs2876648	0.86[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs362963	1.00[ASN][1000 genomes]
rs362969	0.90[AFR][1000 genomes];0.80[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs362970	1.00[ASN][1000 genomes]
rs4895695	1.00[ASN][1000 genomes]
rs4896867	0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs55861110	1.00[ASN][1000 genomes]
rs73783679	1.00[ASN][1000 genomes]
rs73783680	1.00[ASN][1000 genomes]
rs73785342	1.00[ASN][1000 genomes]
rs7741820	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv604839	chr6:146305810-146828922	Enhancers Bivalent Enhancer ZNF genes & repeats Weak transcription Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
2	nsv1033913	chr6:146572989-147092365	Enhancers Flanking Active TSS Active TSS Weak transcription Bivalent Enhancer Bivalent/Poised TSS Strong transcription Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
3	nsv538466	chr6:146572989-147092365	Strong transcription Weak transcription Active TSS Flanking Active TSS Enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
4	nsv527571	chr6:146620665-146633818	Enhancers Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:146622000-146624200	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr6:146622400-146625600	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
3	chr6:146622600-146623800	Weak transcription	Pancreatic Islets	Pancreatic Islet
4	chr6:146622600-146624600	Weak transcription	HUES6 Cell Line	embryonic stem cell
5	chr6:146623200-146624600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
6	chr6:146623200-146626000	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
7	chr6:146623600-146624000	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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