Variant report

Variant	rs60237114
Chromosome Location	chr16:70497768-70497769
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr16:70414009..70416973-chr16:70493742..70498097,6	MCF-7	breast:
2	chr16:70413020..70418181-chr16:70497448..70510572,26	MCF-7	breast:
3	chr16:70448317..70451152-chr16:70495785..70498499,2	K562	blood:
4	chr16:70495074..70498358-chr16:70501504..70504908,3	MCF-7	breast:
5	chr16:70405164..70407624-chr16:70497254..70499481,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000260111	Chromatin interaction

Extended variants
information (count: 28 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:23)

rs_ID	r²[population]
rs11860625	0.89[AFR][1000 genomes]
rs11862417	0.89[AMR][1000 genomes]
rs11863471	0.83[AFR][1000 genomes];0.89[AMR][1000 genomes]
rs11863539	0.89[AMR][1000 genomes]
rs16970184	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17879135	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17879236	0.93[AFR][1000 genomes]
rs17882471	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17882726	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17883115	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17884097	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17884146	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17885314	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17885948	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs57384881	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs60345847	0.89[AMR][1000 genomes]
rs60470914	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7196785	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7199145	0.90[AFR][1000 genomes];0.89[AMR][1000 genomes]
rs7199719	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74026073	0.89[AMR][1000 genomes]
rs8049316	0.89[AFR][1000 genomes]
rs8055338	0.89[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv482577	chr16:70329048-70516069	Strong transcription Weak transcription Enhancers Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	48 gene(s)	inside rSNPs	diseases
2	nsv833272	chr16:70369769-70569723	Enhancers Strong transcription Weak transcription Genic enhancers Active TSS Flanking Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	58 gene(s)	inside rSNPs	diseases
3	esv1815154	chr16:70467819-70515355	Enhancers Weak transcription Strong transcription Active TSS Genic enhancers Flanking Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
4	esv2830027	chr16:70473934-70558039	Genic enhancers Enhancers Strong transcription Flanking Active TSS Weak transcription Bivalent Enhancer Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	30 gene(s)	inside rSNPs	diseases
5	nsv906873	chr16:70495911-70509838	Strong transcription Weak transcription Enhancers Genic enhancers Transcr. at gene 5' and 3' Active TSS ZNF genes & repeats Flanking Active TSS	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:106 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr16:70489200-70506000	Weak transcription	Placenta Amnion	Placenta Amnion
2	chr16:70489200-70508800	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
3	chr16:70489400-70497800	Weak transcription	Fetal Kidney	kidney
4	chr16:70489400-70500600	Weak transcription	Brain Germinal Matrix	brain
5	chr16:70489400-70500600	Weak transcription	Fetal Lung	lung
6	chr16:70489400-70504600	Weak transcription	A549	lung
7	chr16:70489400-70508800	Weak transcription	HMEC	breast
8	chr16:70489400-70509000	Weak transcription	NHEK	skin
9	chr16:70489400-70509400	Weak transcription	Pancreatic Islets	Pancreatic Islet
10	chr16:70489400-70510600	Weak transcription	HUES48 Cell Line	embryonic stem cell
11	chr16:70489400-70511800	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
12	chr16:70489400-70512000	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
13	chr16:70489400-70513000	Weak transcription	Primary hematopoietic stem cells	blood
14	chr16:70489400-70513400	Weak transcription	H9 Cell Line	embryonic stem cell
15	chr16:70489400-70513800	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
16	chr16:70489400-70513800	Weak transcription	iPS-18 Cell Line	embryonic stem cell
17	chr16:70489400-70514200	Weak transcription	Small Intestine	intestine
18	chr16:70489400-70556400	Weak transcription	Stomach Mucosa	stomach
19	chr16:70490200-70504400	Weak transcription	Hela-S3	cervix
20	chr16:70490200-70514400	Weak transcription	Primary T helper naive cells from peripheral blood	blood
21	chr16:70490600-70505600	Weak transcription	K562	blood
22	chr16:70495000-70504600	Weak transcription	HepG2	liver
23	chr16:70495000-70519000	Strong transcription	Primary T cells from cord blood	blood
24	chr16:70495200-70510200	Weak transcription	Muscle Satellite Cultured Cells	--
25	chr16:70495200-70510200	Weak transcription	Osteobl	bone
26	chr16:70495400-70499200	Strong transcription	Cortex derived primary cultured neurospheres	brain
27	chr16:70495400-70500400	Strong transcription	Fetal Intestine Small	intestine
28	chr16:70495400-70506800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
29	chr16:70495400-70507000	Weak transcription	Fetal Brain Female	brain
30	chr16:70495400-70508800	Weak transcription	GM12878-XiMat	blood
31	chr16:70495400-70510200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
32	chr16:70495400-70510200	Weak transcription	HSMM	muscle
33	chr16:70495400-70510400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
34	chr16:70495600-70500000	Strong transcription	Fetal Intestine Large	intestine
35	chr16:70495600-70504400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
36	chr16:70495800-70500000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
37	chr16:70495800-70512800	Weak transcription	Right Atrium	heart
38	chr16:70496000-70500600	Strong transcription	Fetal Stomach	stomach
39	chr16:70496000-70500800	Strong transcription	Foreskin Fibroblast Primary Cells skin02	Skin
40	chr16:70496800-70498600	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
41	chr16:70496800-70499400	Strong transcription	Fetal Muscle Leg	muscle
42	chr16:70496800-70500200	Strong transcription	Skeletal Muscle Female	skeletal muscle
43	chr16:70496800-70501800	Strong transcription	Adipose Nuclei	Adipose
44	chr16:70496800-70502000	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
45	chr16:70497000-70498000	Strong transcription	HSMMtube	muscle
46	chr16:70497000-70498200	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
47	chr16:70497000-70498200	Strong transcription	NHLF	lung
48	chr16:70497000-70499000	Strong transcription	Thymus	Thymus
49	chr16:70497000-70499200	Strong transcription	Rectal Mucosa Donor 31	rectum
50	chr16:70497000-70499400	Strong transcription	Primary T cells fromperipheralblood	blood

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links