Variant report

Variant	rs60241275
Chromosome Location	chr2:9734053-9734054
allele	-/AC/TACA
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr2:9730159..9735372-chr2:9781969..9785269,4	K562	blood:
2	chr2:9731942..9734354-chr2:9738501..9740007,2	K562	blood:
3	chr2:9732098..9735111-chr2:9769658..9771887,3	K562	blood:
4	chr2:9733224..9734834-chr2:9768969..9772281,3	MCF-7	breast:
5	chr2:9732505..9736094-chr2:9769784..9772309,4	MCF-7	breast:
6	chr2:9729553..9733750-chr2:9733992..9737827,4	K562	blood:

Variant related genes	Relation type
ENSG00000134308	Chromatin interaction

Extended variants
information (count: 2 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv580915	chr2:9308148-9844178	Enhancers Weak transcription Active TSS ZNF genes & repeats Strong transcription Genic enhancers Flanking Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	70 gene(s)	inside rSNPs	diseases
2	nsv214045	chr2:9734039-9742991	Weak transcription ZNF genes & repeats Strong transcription Genic enhancers Enhancers Flanking Active TSS Active TSS Transcr. at gene 5' and 3'	Chromatin interactive region	1 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:124 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:9696800-9767600	Weak transcription	Gastric	stomach
2	chr2:9706400-9734200	Weak transcription	Skeletal Muscle Male	skeletal muscle
3	chr2:9715000-9735200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
4	chr2:9717600-9734800	Weak transcription	Spleen	Spleen
5	chr2:9719200-9747800	Weak transcription	Lung	lung
6	chr2:9719400-9734800	Weak transcription	Aorta	Aorta
7	chr2:9720400-9734200	Weak transcription	Small Intestine	intestine
8	chr2:9720400-9734800	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
9	chr2:9722800-9734600	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
10	chr2:9723400-9736200	Strong transcription	Dnd41	blood
11	chr2:9723600-9734600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
12	chr2:9723600-9735400	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
13	chr2:9723800-9739800	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
14	chr2:9724200-9734600	Weak transcription	Brain Cingulate Gyrus	brain
15	chr2:9726000-9734400	Weak transcription	Primary T killer memory cells from peripheral blood	blood
16	chr2:9726000-9734400	Weak transcription	Colon Smooth Muscle	Colon
17	chr2:9726000-9734800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
18	chr2:9726000-9734800	Weak transcription	H9 Cell Line	embryonic stem cell
19	chr2:9726000-9739800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
20	chr2:9726400-9734600	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
21	chr2:9728200-9734200	Weak transcription	Brain Substantia Nigra	brain
22	chr2:9728200-9734600	Weak transcription	iPS-15b Cell Line	embryonic stem cell
23	chr2:9728200-9734600	Weak transcription	Brain Angular Gyrus	brain
24	chr2:9728400-9734600	Weak transcription	Brain Inferior Temporal Lobe	brain
25	chr2:9728400-9739400	Weak transcription	Placenta Amnion	Placenta Amnion
26	chr2:9728600-9734800	Weak transcription	Primary T helper naive cells from peripheral blood	blood
27	chr2:9728600-9739200	Weak transcription	Primary neutrophils fromperipheralblood	blood
28	chr2:9728800-9739200	Weak transcription	Colonic Mucosa	Colon
29	chr2:9729600-9734600	Weak transcription	Rectal Smooth Muscle	rectum
30	chr2:9729600-9736800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
31	chr2:9729800-9738200	Weak transcription	Thymus	Thymus
32	chr2:9730000-9735200	Enhancers	Pancreatic Islets	Pancreatic Islet
33	chr2:9730400-9734200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
34	chr2:9730400-9734200	Weak transcription	Brain Hippocampus Middle	brain
35	chr2:9730400-9734400	Weak transcription	Duodenum Smooth Muscle	Duodenum
36	chr2:9730400-9734600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
37	chr2:9730400-9734800	Weak transcription	Right Ventricle	heart
38	chr2:9730400-9735000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
39	chr2:9730400-9736600	Weak transcription	HUVEC	blood vessel
40	chr2:9730400-9736800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
41	chr2:9730400-9738400	Weak transcription	Fetal Stomach	stomach
42	chr2:9730600-9734200	Weak transcription	Brain Anterior Caudate	brain
43	chr2:9730600-9734200	Weak transcription	Sigmoid Colon	Sigmoid Colon
44	chr2:9730600-9734200	Weak transcription	NHLF	lung
45	chr2:9730600-9734600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
46	chr2:9730600-9735000	Weak transcription	Stomach Smooth Muscle	stomach
47	chr2:9730600-9738200	Weak transcription	Brain Germinal Matrix	brain
48	chr2:9730800-9734800	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
49	chr2:9731000-9734400	Genic enhancers	A549	lung
50	chr2:9731200-9734200	Weak transcription	Primary B cells from peripheral blood	blood

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