Variant report

Variant	rs60259241
Chromosome Location	chr1:226004593-226004594
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:8)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:8 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr1:225964451..225968253-chr1:226004384..226007160,4	K562	blood:
2	chr1:225996263..225999191-chr1:226003429..226005818,2	MCF-7	breast:
3	chr1:225965233..225968253-chr1:226004557..226007160,3	K562	blood:
4	chr1:225965293..225968073-chr1:226004323..226008130,4	MCF-7	breast:
5	chr1:226004168..226006685-chr1:226076298..226078625,2	K562	blood:
6	chr1:226004025..226006566-chr1:226007208..226010297,4	MCF-7	breast:
7	chr1:225996256..225999661-chr1:226002108..226005312,5	MCF-7	breast:
8	chr1:226004285..226007407-chr1:226008778..226014958,9	K562	blood:

No data

Variant related genes	Relation type
ENSG00000143742	Chromatin interaction
ENSG00000243709	Chromatin interaction
ENSG00000143819	Chromatin interaction

Extended variants
information (count: 9 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:4)

rs_ID	r²[population]
rs10799325	0.97[ASN][1000 genomes]
rs57724429	1.00[ASN][1000 genomes]
rs58235164	0.91[ASN][1000 genomes]
rs59409022	0.97[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv1795046	chr1:225874059-226091150	Weak transcription Flanking Active TSS Active TSS Enhancers Strong transcription Genic enhancers Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	40 gene(s)	inside rSNPs	diseases
2	esv1834932	chr1:225874059-226091150	Enhancers Weak transcription Flanking Active TSS Strong transcription Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	40 gene(s)	inside rSNPs	diseases
3	esv1834948	chr1:225874059-226214882	Weak transcription Enhancers Strong transcription Flanking Active TSS Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	60 gene(s)	inside rSNPs	diseases
4	nsv524126	chr1:225973777-226210653	Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Active TSS Genic enhancers Strong transcription Enhancers ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	43 gene(s)	inside rSNPs	diseases
5	nsv947519	chr1:225998770-226034631	Flanking Active TSS Strong transcription Enhancers Weak transcription Active TSS Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:102 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:225998400-226007800	Enhancers	Spleen	Spleen
2	chr1:225998600-226005600	Enhancers	Stomach Mucosa	stomach
3	chr1:225999200-226004800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
4	chr1:225999200-226006400	Enhancers	Lung	lung
5	chr1:225999200-226006600	Enhancers	Psoas Muscle	Psoas
6	chr1:225999400-226004600	Weak transcription	H9 Cell Line	embryonic stem cell
7	chr1:225999400-226004800	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
8	chr1:225999400-226006600	Enhancers	Right Ventricle	heart
9	chr1:225999400-226007800	Enhancers	Left Ventricle	heart
10	chr1:225999600-226005200	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
11	chr1:225999600-226006400	Enhancers	Brain Cingulate Gyrus	brain
12	chr1:225999800-226006400	Enhancers	Brain Hippocampus Middle	brain
13	chr1:226000000-226005400	Weak transcription	Thymus	Thymus
14	chr1:226000000-226006600	Enhancers	Brain Substantia Nigra	brain
15	chr1:226000000-226019400	Weak transcription	Fetal Brain Female	brain
16	chr1:226000200-226006400	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
17	chr1:226000400-226007400	Enhancers	Brain Anterior Caudate	brain
18	chr1:226000400-226015800	Enhancers	Ovary	ovary
19	chr1:226001400-226005000	Weak transcription	Primary hematopoietic stem cells short term culture	blood
20	chr1:226001400-226005200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
21	chr1:226001400-226005400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
22	chr1:226001600-226004600	Enhancers	Rectal Mucosa Donor 31	rectum
23	chr1:226001600-226005000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
24	chr1:226001600-226005000	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
25	chr1:226001600-226005000	Weak transcription	HUVEC	blood vessel
26	chr1:226001800-226004600	Weak transcription	iPS-15b Cell Line	embryonic stem cell
27	chr1:226001800-226004600	Weak transcription	Fetal Kidney	kidney
28	chr1:226001800-226005000	Weak transcription	NHEK	skin
29	chr1:226001800-226005200	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
30	chr1:226001800-226006800	Enhancers	Rectal Smooth Muscle	rectum
31	chr1:226001800-226010200	Enhancers	HepG2	liver
32	chr1:226001800-226019200	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
33	chr1:226002000-226004600	Weak transcription	HUES64 Cell Line	embryonic stem cell
34	chr1:226002000-226005000	Genic enhancers	A549	lung
35	chr1:226002400-226005200	Weak transcription	Primary monocytes fromperipheralblood	blood
36	chr1:226002400-226005200	Weak transcription	Monocytes-CD14+_RO01746	blood
37	chr1:226002600-226004800	Genic enhancers	Fetal Adrenal Gland	Adrenal Gland
38	chr1:226002600-226006400	Enhancers	Fetal Muscle Leg	muscle
39	chr1:226003200-226004600	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
40	chr1:226003200-226006400	Enhancers	Brain Inferior Temporal Lobe	brain
41	chr1:226003200-226007600	Enhancers	Duodenum Smooth Muscle	Duodenum
42	chr1:226003400-226006000	Enhancers	ES-I3 Cell Line	embryonic stem cell
43	chr1:226003400-226006200	Enhancers	Fetal Muscle Trunk	muscle
44	chr1:226003400-226006400	Enhancers	HUES6 Cell Line	embryonic stem cell
45	chr1:226003400-226006400	Enhancers	Cortex derived primary cultured neurospheres	brain
46	chr1:226003400-226006400	Enhancers	Gastric	stomach
47	chr1:226003400-226006600	Enhancers	iPS-18 Cell Line	embryonic stem cell
48	chr1:226003600-226004600	Weak transcription	iPS-20b Cell Line	embryonic stem cell
49	chr1:226003600-226005000	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
50	chr1:226003600-226005200	Genic enhancers	Right Atrium	heart

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