The 2.0 version of rSNPBase

Variant report

Variant rs60259517
Chromosome Location chr1:175139563-175139564
allele C/T
Outlinks Ensembl   UCSC
Chromatin state (count:77 , 50 per page) page: 1 2
No. Chromosome Location Chromatin state Cell line Tissue
1 chr1:175124000-175140400 Weak transcription Fetal Heart heart
2 chr1:175126800-175141800 Strong transcription Primary B cells from cord blood blood
3 chr1:175126800-175148800 Strong transcription Primary monocytes fromperipheralblood blood
4 chr1:175127000-175148400 Strong transcription Primary mononuclear cells fromperipheralblood Blood
5 chr1:175127200-175147800 Strong transcription Primary Natural Killer cells fromperipheralblood blood
6 chr1:175127400-175144200 Strong transcription Breast Myoepithelial Primary Cells Breast
7 chr1:175127400-175149400 Strong transcription Monocytes-CD14+_RO01746 blood
8 chr1:175127600-175140600 Strong transcription Primary T cells effector/memory enriched fromperipheralblood blood
9 chr1:175127800-175140200 Strong transcription Spleen Spleen
10 chr1:175128200-175140000 Strong transcription Primary T cells from cord blood blood
11 chr1:175129200-175159600 Weak transcription H1 BMP4 Derived Mesendoderm Cultured Cells ES cell derived
12 chr1:175130200-175152600 Weak transcription HUES48 Cell Line embryonic stem cell
13 chr1:175130400-175143400 Weak transcription Mesenchymal Stem Cell Derived Adipocyte Cultured Cells ES cell derived
14 chr1:175135000-175152600 Weak transcription Aorta Aorta
15 chr1:175135000-175158400 Weak transcription Rectal Smooth Muscle rectum
16 chr1:175135800-175140000 Weak transcription Primary T helper naive cells from peripheral blood blood
17 chr1:175135800-175140000 Weak transcription Esophagus oesophagus
18 chr1:175135800-175140200 Weak transcription hESC Derived CD184+ Endoderm Cultured Cells ES cell derived
19 chr1:175135800-175146000 Weak transcription Colonic Mucosa Colon
20 chr1:175135800-175146000 Weak transcription Fetal Intestine Large intestine
21 chr1:175136000-175141800 Weak transcription Fetal Muscle Leg muscle
22 chr1:175136000-175142200 Weak transcription Fetal Muscle Trunk muscle
23 chr1:175136000-175145200 Weak transcription Skeletal Muscle Female skeletal muscle
24 chr1:175136000-175145400 Weak transcription Ovary ovary
25 chr1:175136000-175151600 Weak transcription Fetal Stomach stomach
26 chr1:175136000-175157600 Weak transcription Primary hematopoietic stem cells short term culture blood
27 chr1:175136200-175141800 Weak transcription Psoas Muscle Psoas
28 chr1:175136200-175145000 Weak transcription Fetal Thymus thymus
29 chr1:175136200-175146800 Weak transcription Placenta Amnion Placenta Amnion
30 chr1:175136600-175145200 Weak transcription Duodenum Smooth Muscle Duodenum
31 chr1:175136800-175140200 Weak transcription Primary hematopoietic stem cells blood
32 chr1:175137400-175145400 Weak transcription Stomach Smooth Muscle stomach
33 chr1:175137600-175140600 Genic enhancers Primary T helper cells fromperipheralblood blood
34 chr1:175137800-175140200 Genic enhancers Pancreas Pancrea
35 chr1:175137800-175140600 Genic enhancers Primary T helper 17 cells PMA-I stimulated --
36 chr1:175137800-175140800 Genic enhancers Lung lung
37 chr1:175137800-175140800 Enhancers Small Intestine intestine
38 chr1:175138000-175140000 Genic enhancers HMEC breast
39 chr1:175138000-175140200 Genic enhancers Sigmoid Colon Sigmoid Colon
40 chr1:175138000-175140400 Genic enhancers Foreskin Keratinocyte Primary Cells skin03 Skin
41 chr1:175138000-175140400 Genic enhancers NHEK skin
42 chr1:175138000-175143200 Weak transcription Primary T killer naive cells fromperipheralblood blood
43 chr1:175138000-175148000 Strong transcription Primary hematopoietic stem cells G-CSF-mobilized Male --
44 chr1:175138200-175139600 Enhancers Stomach Mucosa stomach
45 chr1:175138200-175139800 Weak transcription Fetal Intestine Small intestine
46 chr1:175138200-175140200 Enhancers Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells embryonic stem cell
47 chr1:175138400-175140200 Genic enhancers Foreskin Keratinocyte Primary Cells skin02 Skin
48 chr1:175138400-175140400 Genic enhancers Breast variant Human Mammary Epithelial Cells (vHMEC) Breast
49 chr1:175138400-175140400 Enhancers Duodenum Mucosa Duodenum
50 chr1:175138400-175145200 Weak transcription Skeletal Muscle Male skeletal muscle

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Last update: Aug 31, 2015