Variant report

rSNPs within LD-proxies of this variant (count:23)

rs_ID	r²[population]
rs10880326	1.00[ASN][1000 genomes]
rs11181577	0.81[AFR][1000 genomes]
rs11181580	0.81[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs11181590	1.00[ASN][1000 genomes]
rs11503816	1.00[ASN][1000 genomes]
rs12296529	0.85[EUR][1000 genomes]
rs12297892	1.00[ASN][1000 genomes]
rs12307894	1.00[ASN][1000 genomes]
rs12308577	1.00[ASN][1000 genomes]
rs12322671	0.86[ASN][1000 genomes]
rs2406864	1.00[EUR][1000 genomes]
rs4768022	0.85[EUR][1000 genomes]
rs57557308	1.00[ASN][1000 genomes]
rs61471302	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7133912	0.81[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs7303271	1.00[ASN][1000 genomes]
rs7313623	1.00[ASN][1000 genomes]
rs7316762	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73279719	0.81[AFR][1000 genomes]
rs7962244	0.85[EUR][1000 genomes]
rs7963825	1.00[ASN][1000 genomes]
rs7977195	1.00[ASN][1000 genomes]
rs7979122	0.85[EUR][1000 genomes];0.85[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1044790	chr12:42672255-43344184	Enhancers Bivalent Enhancer Strong transcription Weak transcription Genic enhancers Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	29 gene(s)	inside rSNPs	diseases
2	nsv541483	chr12:42672255-43344184	Active TSS Weak transcription Enhancers Strong transcription Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	29 gene(s)	inside rSNPs	diseases
3	nsv832388	chr12:42878328-43087069	Weak transcription Enhancers Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Flanking Active TSS Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:43001400-43005200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
2	chr12:43001600-43004200	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
3	chr12:43002800-43003400	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
4	chr12:43002800-43003600	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
5	chr12:43002800-43007400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
6	chr12:43003200-43003400	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
7	chr12:43003200-43003400	Enhancers	NHDF-Ad	bronchial

Quick Search: