Variant report

Variant	rs60264279
Chromosome Location	chr1:211861314-211861315
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr1:211858955..211861332-chr1:212782172..212783892,2	K562	blood:

Variant related genes	Relation type
ENSG00000162772	Chromatin interaction

Extended variants
information (count: 2 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:1)

rs_ID	r²[population]
rs57154313	0.83[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2754845	chr1:211846605-211878605	Strong transcription Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:20 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:211855400-211861400	Weak transcription	Primary T helper naive cells from peripheral blood	blood
2	chr1:211859600-211868000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
3	chr1:211859600-211872000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
4	chr1:211860000-211865000	Weak transcription	HepG2	liver
5	chr1:211860600-211862000	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
6	chr1:211860800-211861600	Enhancers	Spleen	Spleen
7	chr1:211860800-211861800	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
8	chr1:211860800-211862000	Enhancers	Primary B cells from peripheral blood	blood
9	chr1:211860800-211862000	Enhancers	Primary T cells fromperipheralblood	blood
10	chr1:211860800-211862200	Enhancers	Primary T helper cells PMA-I stimulated	--
11	chr1:211860800-211862200	Enhancers	Primary T killer memory cells from peripheral blood	blood
12	chr1:211861000-211861400	Active TSS	Duodenum Mucosa	Duodenum
13	chr1:211861000-211861400	Enhancers	Sigmoid Colon	Sigmoid Colon
14	chr1:211861000-211861400	Flanking Active TSS	GM12878-XiMat	blood
15	chr1:211861000-211862000	Enhancers	Primary T cells effector/memory enriched fromperipheralblood	blood
16	chr1:211861000-211862200	Enhancers	Primary T helper cells fromperipheralblood	blood
17	chr1:211861200-211861600	Flanking Active TSS	Liver	Liver
18	chr1:211861200-211862000	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
19	chr1:211861200-211862200	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
20	chr1:211861200-211862200	Enhancers	Primary T killer naive cells fromperipheralblood	blood

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