Variant report

Variant	rs60268023
Chromosome Location	chr11:108948363-108948364
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 13 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs11600306	1.00[ASN][1000 genomes]
rs11604258	1.00[ASN][1000 genomes]
rs58200195	1.00[ASN][1000 genomes]
rs61344275	1.00[ASN][1000 genomes]
rs72994736	1.00[ASN][1000 genomes]
rs72994754	1.00[ASN][1000 genomes]
rs72996736	1.00[ASN][1000 genomes]
rs72996743	1.00[ASN][1000 genomes]
rs73010563	1.00[ASN][1000 genomes]
rs73010594	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1040650	chr11:108859584-109174553	Enhancers ZNF genes & repeats Flanking Active TSS Weak transcription Active TSS Bivalent Enhancer Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
2	nsv898390	chr11:108893765-109003536	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
3	esv1815918	chr11:108900487-108948487	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:108946600-108948600	Enhancers	Fetal Muscle Leg	muscle
2	chr11:108947400-108948600	Enhancers	Fetal Thymus	thymus
3	chr11:108947600-108948400	Enhancers	ES-I3 Cell Line	embryonic stem cell
4	chr11:108947600-108948600	Enhancers	Skeletal Muscle Female	skeletal muscle
5	chr11:108947800-108948400	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
6	chr11:108947800-108948400	Enhancers	Thymus	Thymus
7	chr11:108948000-108948600	Enhancers	Breast Myoepithelial Primary Cells	Breast

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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