Variant report

Variant	rs60269152
Chromosome Location	chr1:212584179-212584180
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr1:212581574..212584496-chr1:212586803..212589409,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000065600	Chromatin interaction

Extended variants
information (count: 11 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:3)

rs_ID	r²[population]
rs17018985	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17019011	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs58088494	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1009376	chr1:212292357-212680320	Weak transcription Strong transcription Enhancers Transcr. at gene 5' and 3' Active TSS ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	48 gene(s)	inside rSNPs	diseases
2	nsv549139	chr1:212332294-212876902	Flanking Active TSS Weak transcription Bivalent Enhancer Strong transcription Enhancers Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	114 gene(s)	inside rSNPs	diseases
3	nsv997629	chr1:212404489-212658785	Strong transcription Weak transcription Enhancers Flanking Active TSS Active TSS Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	45 gene(s)	inside rSNPs	diseases
4	nsv535286	chr1:212404489-212658785	Strong transcription Weak transcription ZNF genes & repeats Enhancers Flanking Active TSS Bivalent Enhancer Active TSS Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	45 gene(s)	inside rSNPs	diseases
5	nsv1013110	chr1:212555764-212948092	Flanking Active TSS Bivalent/Poised TSS Strong transcription Enhancers Bivalent Enhancer Weak transcription ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	81 gene(s)	inside rSNPs	diseases
6	nsv535287	chr1:212555764-212948092	Weak transcription Bivalent Enhancer Flanking Active TSS Enhancers Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Active TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	81 gene(s)	inside rSNPs	diseases
7	esv1828436	chr1:212577765-212591863	Weak transcription Enhancers Flanking Active TSS Genic enhancers Strong transcription Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	6 gene(s)	inside rSNPs	diseases
8	esv3415613	chr1:212581229-212584627	Strong transcription Weak transcription Genic enhancers Enhancers	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:120 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:212556800-212587600	Weak transcription	Small Intestine	intestine
2	chr1:212571000-212586200	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
3	chr1:212572600-212585000	Strong transcription	Dnd41	blood
4	chr1:212572800-212585600	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
5	chr1:212575200-212584400	Weak transcription	Primary T killer memory cells from peripheral blood	blood
6	chr1:212575200-212585800	Strong transcription	ES-UCSF4 Cell Line	embryonic stem cell
7	chr1:212575400-212584600	Strong transcription	Ganglion Eminence derived primary cultured neurospheres	brain
8	chr1:212575400-212585000	Strong transcription	Thymus	Thymus
9	chr1:212575600-212585200	Strong transcription	HUES6 Cell Line	embryonic stem cell
10	chr1:212576000-212584200	Strong transcription	Primary T helper naive cells fromperipheralblood	blood
11	chr1:212576000-212585200	Strong transcription	H9 Cell Line	embryonic stem cell
12	chr1:212576200-212585200	Strong transcription	HUES48 Cell Line	embryonic stem cell
13	chr1:212576200-212585200	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
14	chr1:212576600-212585000	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
15	chr1:212577000-212584200	Strong transcription	Monocytes-CD14+_RO01746	blood
16	chr1:212577000-212584600	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
17	chr1:212577200-212586200	Strong transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
18	chr1:212577200-212586200	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
19	chr1:212577600-212585000	Strong transcription	iPS-18 Cell Line	embryonic stem cell
20	chr1:212577600-212585000	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
21	chr1:212577600-212585000	Strong transcription	Foreskin Melanocyte Primary Cells skin01	Skin
22	chr1:212577600-212585000	Strong transcription	NHEK	skin
23	chr1:212577800-212584800	Strong transcription	Fetal Adrenal Gland	Adrenal Gland
24	chr1:212577800-212585000	Strong transcription	HUES64 Cell Line	embryonic stem cell
25	chr1:212577800-212585000	Strong transcription	iPS-20b Cell Line	embryonic stem cell
26	chr1:212577800-212585000	Strong transcription	Primary T cells fromperipheralblood	blood
27	chr1:212577800-212586600	Strong transcription	Fetal Muscle Trunk	muscle
28	chr1:212578000-212585000	Strong transcription	GM12878-XiMat	blood
29	chr1:212578000-212585800	Strong transcription	Primary T cells from cord blood	blood
30	chr1:212578000-212586000	Strong transcription	Fetal Thymus	thymus
31	chr1:212578400-212584600	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
32	chr1:212578400-212584600	Strong transcription	Primary T helper cells PMA-I stimulated	--
33	chr1:212578400-212584800	Strong transcription	Foreskin Fibroblast Primary Cells skin01	Skin
34	chr1:212578400-212585000	Strong transcription	Primary T helper cells fromperipheralblood	blood
35	chr1:212578400-212585000	Strong transcription	K562	blood
36	chr1:212578600-212584400	Strong transcription	Muscle Satellite Cultured Cells	--
37	chr1:212578600-212584600	Strong transcription	Primary B cells from cord blood	blood
38	chr1:212578600-212585000	Strong transcription	H1 Cell Line	embryonic stem cell
39	chr1:212578600-212585200	Strong transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
40	chr1:212578600-212585200	Strong transcription	Fetal Brain Female	brain
41	chr1:212578800-212584800	Strong transcription	Brain Cingulate Gyrus	brain
42	chr1:212578800-212585000	Strong transcription	iPS-15b Cell Line	embryonic stem cell
43	chr1:212579600-212585000	Strong transcription	Primary T helper naive cells from peripheral blood	blood
44	chr1:212579800-212584200	Strong transcription	Cortex derived primary cultured neurospheres	brain
45	chr1:212579800-212584200	Strong transcription	Placenta	Placenta
46	chr1:212579800-212584200	Strong transcription	Osteobl	bone
47	chr1:212579800-212584800	Strong transcription	Breast Myoepithelial Primary Cells	Breast
48	chr1:212579800-212584800	Strong transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
49	chr1:212579800-212584800	Strong transcription	Brain Germinal Matrix	brain
50	chr1:212579800-212587000	Weak transcription	Right Atrium	heart

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