Variant report

Variant	rs60274137
Chromosome Location	chr1:175040865-175040866
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr1:175028783..175030971-chr1:175038361..175041126,2	K562	blood:

Extended variants
information (count: 9 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:5)

rs_ID	r²[population]
rs56383990	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs59391278	1.00[AMR][1000 genomes]
rs73044920	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73044924	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74128560	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1011472	chr1:175013165-175042885	Active TSS Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region	6 gene(s)	inside rSNPs	diseases
2	nsv1012861	chr1:175021780-175063160	Flanking Active TSS Enhancers Weak transcription Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region	5 gene(s)	inside rSNPs	diseases
3	nsv535210	chr1:175021780-175063160	Enhancers Active TSS Weak transcription Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region	5 gene(s)	inside rSNPs	diseases
4	nsv825487	chr1:175031609-175113572	Weak transcription Enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:27 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:175036800-175041000	Weak transcription	iPS-15b Cell Line	embryonic stem cell
2	chr1:175037200-175041000	Weak transcription	H1 Cell Line	embryonic stem cell
3	chr1:175037200-175041000	Weak transcription	iPS-18 Cell Line	embryonic stem cell
4	chr1:175037200-175041000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
5	chr1:175037200-175041400	Weak transcription	Fetal Muscle Trunk	muscle
6	chr1:175038000-175041200	Enhancers	Cortex derived primary cultured neurospheres	brain
7	chr1:175038200-175041000	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
8	chr1:175038600-175041000	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
9	chr1:175039200-175041400	Enhancers	Fetal Muscle Leg	muscle
10	chr1:175039600-175041200	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
11	chr1:175039600-175041200	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
12	chr1:175039800-175041200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
13	chr1:175039800-175042400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
14	chr1:175039800-175046600	Enhancers	Primary hematopoietic stem cells short term culture	blood
15	chr1:175040200-175041400	Enhancers	Monocytes-CD14+_RO01746	blood
16	chr1:175040200-175041800	Enhancers	Primary hematopoietic stem cells	blood
17	chr1:175040400-175041400	Enhancers	Adipose Nuclei	Adipose
18	chr1:175040400-175042800	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
19	chr1:175040400-175043200	Enhancers	Primary monocytes fromperipheralblood	blood
20	chr1:175040600-175041200	Enhancers	Brain Hippocampus Middle	brain
21	chr1:175040600-175041200	Enhancers	Fetal Brain Male	brain
22	chr1:175040600-175041400	Enhancers	ES-I3 Cell Line	embryonic stem cell
23	chr1:175040600-175041400	Enhancers	Colon Smooth Muscle	Colon
24	chr1:175040600-175041400	Enhancers	Skeletal Muscle Male	skeletal muscle
25	chr1:175040600-175044000	Enhancers	HUES48 Cell Line	embryonic stem cell
26	chr1:175040800-175042000	Enhancers	Fetal Lung	lung
27	chr1:175040800-175043000	Enhancers	Fetal Stomach	stomach

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