Variant report

Variant	rs60275576
Chromosome Location	chr4:151040141-151040142
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr4:151033571..151036431-chr4:151037555..151040280,2	MCF-7	breast:

Extended variants
information (count: 18 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs12645121	0.85[AFR][1000 genomes];0.82[AMR][1000 genomes];0.84[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs4835173	0.89[ASN][1000 genomes]
rs4835174	0.89[ASN][1000 genomes]
rs4835618	0.85[ASN][1000 genomes]
rs58937532	0.85[AFR][1000 genomes];0.83[EUR][1000 genomes]
rs66539203	0.93[ASN][1000 genomes]
rs67935571	0.87[ASN][1000 genomes]
rs68167852	0.93[ASN][1000 genomes]
rs72965541	0.81[AFR][1000 genomes];0.82[AMR][1000 genomes];0.84[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs72965543	0.81[AFR][1000 genomes];0.84[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs72965554	0.81[AFR][1000 genomes];0.84[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs72965555	0.81[AFR][1000 genomes];0.84[EUR][1000 genomes]
rs72965566	0.81[AFR][1000 genomes];0.84[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1026797	chr4:150246932-151217137	Bivalent Enhancer Enhancers Strong transcription Flanking Active TSS Active TSS Weak transcription Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
2	nsv932022	chr4:150831733-151419552	Enhancers Weak transcription Strong transcription Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Active TSS Bivalent/Poised TSS Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
3	nsv530158	chr4:150877557-151040992	Enhancers Active TSS Weak transcription Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
4	nsv1032689	chr4:150971003-151316856	Flanking Active TSS Enhancers Weak transcription Active TSS Strong transcription ZNF genes & repeats Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
5	nsv537300	chr4:150971003-151316856	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:33 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:151035600-151040400	Weak transcription	HSMM	muscle
2	chr4:151036200-151042600	Weak transcription	Brain Substantia Nigra	brain
3	chr4:151036400-151042400	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
4	chr4:151036600-151040400	Enhancers	A549	lung
5	chr4:151037200-151040600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
6	chr4:151037400-151040600	Weak transcription	NHEK	skin
7	chr4:151037400-151048400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
8	chr4:151038200-151040400	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
9	chr4:151038200-151051600	Weak transcription	Brain Hippocampus Middle	brain
10	chr4:151038400-151040400	Weak transcription	Colon Smooth Muscle	Colon
11	chr4:151038400-151040400	Weak transcription	Duodenum Smooth Muscle	Duodenum
12	chr4:151038400-151043800	Weak transcription	Stomach Smooth Muscle	stomach
13	chr4:151038600-151040600	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
14	chr4:151038800-151040400	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
15	chr4:151038800-151070000	Weak transcription	Ovary	ovary
16	chr4:151039000-151040400	Weak transcription	NHDF-Ad	bronchial
17	chr4:151039000-151040600	Weak transcription	Breast Myoepithelial Primary Cells	Breast
18	chr4:151039000-151042600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
19	chr4:151039000-151048000	Weak transcription	Brain Cingulate Gyrus	brain
20	chr4:151039000-151048600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
21	chr4:151039000-151052800	Weak transcription	Right Ventricle	heart
22	chr4:151039200-151040600	Weak transcription	Fetal Heart	heart
23	chr4:151039400-151040400	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
24	chr4:151039400-151040400	Weak transcription	HSMMtube	muscle
25	chr4:151039400-151040400	Weak transcription	NH-A	brain
26	chr4:151039400-151042800	Weak transcription	Brain Anterior Caudate	brain
27	chr4:151039400-151044800	Weak transcription	Aorta	Aorta
28	chr4:151039400-151047200	Weak transcription	NHLF	lung
29	chr4:151039800-151040200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
30	chr4:151040000-151040200	Strong transcription	Cortex derived primary cultured neurospheres	brain
31	chr4:151040000-151040400	Enhancers	Muscle Satellite Cultured Cells	--
32	chr4:151040000-151041800	Enhancers	Osteobl	bone
33	chr4:151040000-151042600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung

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