The 2.0 version of rSNPBase

Variant report

Variant rs60280923
Chromosome Location chr10:22880635-22880636
allele C/T
Outlinks Ensembl   UCSC
Chromatin state (count:116 , 50 per page) page: 1 2 3
No. Chromosome Location Chromatin state Cell line Tissue
1 chr10:22825600-22888000 Weak transcription HMEC breast
2 chr10:22829000-22887400 Weak transcription Rectal Mucosa Donor 31 rectum
3 chr10:22844200-22904800 Weak transcription Rectal Smooth Muscle rectum
4 chr10:22850400-22882000 Weak transcription Ganglion Eminence derived primary cultured neurospheres brain
5 chr10:22850400-22882600 Weak transcription Cortex derived primary cultured neurospheres brain
6 chr10:22854200-22887400 Weak transcription NHDF-Ad bronchial
7 chr10:22854200-22887400 Weak transcription NHEK skin
8 chr10:22855600-22882600 Weak transcription ES-I3 Cell Line embryonic stem cell
9 chr10:22855800-22881400 Weak transcription iPS DF 19.11 Cell Line embryonic stem cell
10 chr10:22856600-22899200 Weak transcription iPS-15b Cell Line embryonic stem cell
11 chr10:22856800-22888200 Weak transcription Breast variant Human Mammary Epithelial Cells (vHMEC) Breast
12 chr10:22857000-22888200 Weak transcription Small Intestine intestine
13 chr10:22858200-22904000 Weak transcription Colonic Mucosa Colon
14 chr10:22860400-22882200 Strong transcription Primary T regulatory cells fromperipheralblood blood
15 chr10:22862200-22885800 Weak transcription NHLF lung
16 chr10:22862400-22886000 Weak transcription HSMMtube muscle
17 chr10:22862400-22887400 Weak transcription A549 lung
18 chr10:22862400-22902000 Weak transcription iPS DF 6.9 Cell Line embryonic stem cell
19 chr10:22863800-22886400 Strong transcription Primary hematopoietic stem cells short term culture blood
20 chr10:22864000-22882400 Strong transcription Primary T cells from cord blood blood
21 chr10:22866600-22887600 Weak transcription Foreskin Keratinocyte Primary Cells skin02 Skin
22 chr10:22866600-22893800 Weak transcription Foreskin Keratinocyte Primary Cells skin03 Skin
23 chr10:22870000-22885600 Weak transcription NH-A brain
24 chr10:22870200-22893400 Weak transcription Skeletal Muscle Female skeletal muscle
25 chr10:22870400-22895200 Weak transcription HepG2 liver
26 chr10:22871200-22882200 Strong transcription Primary hematopoietic stem cells G-CSF-mobilized Male --
27 chr10:22871200-22882600 Strong transcription Monocytes-CD14+_RO01746 blood
28 chr10:22872000-22887600 Strong transcription Primary monocytes fromperipheralblood blood
29 chr10:22872600-22881400 Weak transcription Foreskin Fibroblast Primary Cells skin02 Skin
30 chr10:22874000-22888200 Weak transcription Placenta Placenta
31 chr10:22875400-22882200 Strong transcription hESC Derived CD56+ Mesoderm Cultured Cells ES cell derived
32 chr10:22875800-22881600 Strong transcription Primary B cells from peripheral blood blood
33 chr10:22875800-22881800 Strong transcription Primary B cells from cord blood blood
34 chr10:22875800-22882000 Strong transcription Primary hematopoietic stem cells G-CSF-mobilized Female --
35 chr10:22875800-22882000 Strong transcription Fetal Thymus thymus
36 chr10:22875800-22888000 Weak transcription Stomach Mucosa stomach
37 chr10:22876200-22882200 Strong transcription Primary hematopoietic stem cells blood
38 chr10:22876400-22880800 Strong transcription Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells embryonic stem cell
39 chr10:22876400-22882200 Strong transcription Dnd41 blood
40 chr10:22876600-22881000 Strong transcription K562 blood
41 chr10:22876600-22881800 Strong transcription Primary T helper 17 cells PMA-I stimulated --
42 chr10:22876600-22882000 Strong transcription Primary T cells effector/memory enriched fromperipheralblood blood
43 chr10:22876600-22885600 Strong transcription GM12878-XiMat blood
44 chr10:22876800-22881200 Strong transcription HUES64 Cell Line embryonic stem cell
45 chr10:22877200-22881000 Strong transcription Primary T helper cells fromperipheralblood blood
46 chr10:22877200-22896400 Weak transcription Fetal Intestine Large intestine
47 chr10:22877400-22890200 Weak transcription Right Ventricle heart
48 chr10:22877600-22882800 Weak transcription iPS-18 Cell Line embryonic stem cell
49 chr10:22877600-22893400 Weak transcription Brain Dorsolateral Prefrontal Cortex brain
50 chr10:22878400-22880800 Strong transcription Primary T killer naive cells fromperipheralblood blood

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Last update: Aug 31, 2015