Variant report

Variant	rs60295158
Chromosome Location	chr11:119530556-119530557
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 28 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:23)

rs_ID	r²[population]
rs10892431	1.00[EUR][1000 genomes]
rs11217391	1.00[EUR][1000 genomes]
rs11217398	1.00[EUR][1000 genomes]
rs11217399	1.00[EUR][1000 genomes]
rs11217400	1.00[EUR][1000 genomes]
rs11217401	1.00[EUR][1000 genomes]
rs11217403	1.00[EUR][1000 genomes]
rs11217406	1.00[EUR][1000 genomes]
rs11217409	1.00[EUR][1000 genomes]
rs11217425	1.00[EUR][1000 genomes]
rs11217485	1.00[EUR][1000 genomes]
rs11217498	1.00[EUR][1000 genomes]
rs11600941	1.00[EUR][1000 genomes]
rs11822242	1.00[EUR][1000 genomes]
rs12279707	1.00[EUR][1000 genomes]
rs12281756	1.00[EUR][1000 genomes]
rs12282037	1.00[EUR][1000 genomes]
rs4424680	1.00[EUR][1000 genomes]
rs57088022	1.00[EUR][1000 genomes]
rs59997117	1.00[EUR][1000 genomes]
rs73575046	1.00[EUR][1000 genomes]
rs7927749	1.00[EUR][1000 genomes]
rs7936254	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1042460	chr11:119430954-119540452	Enhancers Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Strong transcription Bivalent Enhancer Active TSS Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
2	nsv898420	chr11:119488646-119541332	Enhancers Genic enhancers Weak transcription Bivalent Enhancer Strong transcription Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
3	nsv898421	chr11:119499014-119631325	Enhancers Flanking Bivalent TSS/Enh Active TSS Weak transcription ZNF genes & repeats Genic enhancers Bivalent Enhancer Flanking Active TSS Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases
4	nsv984471	chr11:119505802-119568473	Enhancers Weak transcription ZNF genes & repeats Strong transcription Genic enhancers Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
5	nsv898422	chr11:119518006-119601779	Bivalent Enhancer Enhancers Bivalent/Poised TSS ZNF genes & repeats Weak transcription Active TSS Strong transcription Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:28 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:119522800-119532400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
2	chr11:119523000-119532000	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
3	chr11:119523200-119531200	Weak transcription	Pancreas	Pancrea
4	chr11:119523200-119534200	Weak transcription	Spleen	Spleen
5	chr11:119523200-119541800	Weak transcription	Left Ventricle	heart
6	chr11:119523600-119536200	Weak transcription	H9 Cell Line	embryonic stem cell
7	chr11:119525200-119530600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
8	chr11:119528000-119531200	Weak transcription	Fetal Intestine Small	intestine
9	chr11:119528600-119531800	Weak transcription	Esophagus	oesophagus
10	chr11:119528600-119534200	Weak transcription	NHEK	skin
11	chr11:119528600-119534600	Enhancers	Fetal Muscle Leg	muscle
12	chr11:119528800-119532200	Enhancers	Fetal Muscle Trunk	muscle
13	chr11:119528800-119534400	Weak transcription	iPS-20b Cell Line	embryonic stem cell
14	chr11:119528800-119534600	Strong transcription	Breast Myoepithelial Primary Cells	Breast
15	chr11:119529000-119531400	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
16	chr11:119529400-119531800	Weak transcription	Primary neutrophils fromperipheralblood	blood
17	chr11:119529400-119533800	Weak transcription	Brain Anterior Caudate	brain
18	chr11:119529400-119534400	Weak transcription	Fetal Intestine Large	intestine
19	chr11:119529600-119533800	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
20	chr11:119529600-119535800	Weak transcription	HMEC	breast
21	chr11:119529800-119536200	Weak transcription	Rectal Mucosa Donor 29	rectum
22	chr11:119530000-119530800	Enhancers	Placenta	Placenta
23	chr11:119530000-119532200	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
24	chr11:119530000-119534200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
25	chr11:119530200-119531000	Enhancers	Duodenum Mucosa	Duodenum
26	chr11:119530200-119534000	Weak transcription	H1 Cell Line	embryonic stem cell
27	chr11:119530200-119546000	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
28	chr11:119530400-119541600	Weak transcription	Small Intestine	intestine

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