Variant report

Variant	rs60297263
Chromosome Location	chr12:11776770-11776771
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr12:11774248..11776994-chr12:11784131..11786795,2	K562	blood:
2	chr12:11776574..11778214-chr12:11782212..11784019,2	K562	blood:
3	chr12:11775387..11777781-chr12:11801742..11803423,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000139083	Chromatin interaction

Extended variants
information (count: 4 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:2)

rs_ID	r²[population]
rs12319646	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73286656	1.00[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv898803	chr12:11757867-11794636	Weak transcription ZNF genes & repeats Enhancers Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS	Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
2	nsv470267	chr12:11767406-11787989	Flanking Bivalent TSS/Enh Weak transcription Enhancers ZNF genes & repeats Bivalent/Poised TSS Flanking Active TSS Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:33 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:11774400-11777000	Enhancers	Fetal Thymus	thymus
2	chr12:11774800-11776800	Enhancers	iPS-15b Cell Line	embryonic stem cell
3	chr12:11774800-11777000	Enhancers	H9 Cell Line	embryonic stem cell
4	chr12:11774800-11777000	Enhancers	HUES6 Cell Line	embryonic stem cell
5	chr12:11774800-11777200	Enhancers	Primary hematopoietic stem cells	blood
6	chr12:11775000-11776800	Enhancers	Thymus	Thymus
7	chr12:11775000-11777200	Enhancers	HUES48 Cell Line	embryonic stem cell
8	chr12:11775200-11776800	Enhancers	ES-WA7 Cell Line	embryonic stem cell
9	chr12:11775200-11777200	Enhancers	HUES64 Cell Line	embryonic stem cell
10	chr12:11775200-11777200	Enhancers	iPS-18 Cell Line	embryonic stem cell
11	chr12:11775200-11777200	Enhancers	Primary monocytes fromperipheralblood	blood
12	chr12:11775400-11776800	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
13	chr12:11775400-11776800	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
14	chr12:11775400-11776800	Enhancers	HepG2	liver
15	chr12:11775400-11777000	Enhancers	ES-I3 Cell Line	embryonic stem cell
16	chr12:11775400-11777000	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
17	chr12:11775400-11777200	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
18	chr12:11775400-11777200	Enhancers	iPS-20b Cell Line	embryonic stem cell
19	chr12:11775400-11777200	Enhancers	Liver	Liver
20	chr12:11775400-11777200	Enhancers	Fetal Lung	lung
21	chr12:11775400-11777200	Enhancers	Placenta Amnion	Placenta Amnion
22	chr12:11775400-11777200	Enhancers	GM12878-XiMat	blood
23	chr12:11776000-11776800	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
24	chr12:11776000-11776800	Enhancers	K562	blood
25	chr12:11776000-11777000	Enhancers	Primary B cells from cord blood	blood
26	chr12:11776000-11777000	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Female	--
27	chr12:11776000-11777200	Enhancers	Primary neutrophils fromperipheralblood	blood
28	chr12:11776000-11777200	Flanking Active TSS	Monocytes-CD14+_RO01746	blood
29	chr12:11776200-11776800	Enhancers	NHEK	skin
30	chr12:11776200-11776800	Enhancers	Osteobl	bone
31	chr12:11776400-11776800	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
32	chr12:11776400-11777200	Enhancers	Primary hematopoietic stem cells short term culture	blood
33	chr12:11776600-11786400	Weak transcription	H1 Cell Line	embryonic stem cell

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