Variant report

Variant	rs60297312
Chromosome Location	chr15:93396615-93396616
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	FOXP2	chr15:93396451-93396707	SK-N-MC	brain:	n/a	n/a
2	MAX	chr15:93396512-93396896	H1-hESC	embryonic stem cell:	n/a	chr15:93396591-93396601
3	MAX	chr15:93396554-93396768	H1-hESC	embryonic stem cell:	n/a	chr15:93396591-93396601
4	MAX	chr15:93396520-93396886	H1-hESC	embryonic stem cell:	n/a	chr15:93396591-93396601
5	SPI1	chr15:93396590-93396910	GM12878	blood:	n/a	n/a
6	WRNIP1	chr15:93396561-93396708	GM12878	blood:	n/a	n/a
7	BATF	chr15:93396596-93396874	GM12878	blood:	n/a	n/a
8	E2F6	chr15:93396496-93396959	H1-hESC	embryonic stem cell:	n/a	n/a
9	BATF	chr15:93396597-93396864	GM12878	blood:	n/a	n/a
10	MAX	chr15:93396507-93396766	K562	blood:	n/a	chr15:93396591-93396601

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr15:93393471..93398396-chr15:93424059..93427661,6	K562	blood:
2	chr15:93396157..93398283-chr15:93424059..93426007,2	K562	blood:

Variant related genes	Relation type
RN7SL599P	TF binding region
ENSG00000272888	Chromatin interaction
ENSG00000173575	Chromatin interaction

Extended variants
information (count: 10 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:5)

rs_ID	r²[population]
rs1898914	1.00[ASN][1000 genomes]
rs1898915	1.00[ASN][1000 genomes]
rs41439544	1.00[ASN][1000 genomes]
rs58592069	1.00[ASN][1000 genomes]
rs963719	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv904499	chr15:92914795-93472582	Bivalent Enhancer Flanking Active TSS Genic enhancers Strong transcription Active TSS Transcr. at gene 5' and 3' Weak transcription Enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	163 gene(s)	inside rSNPs	diseases
2	nsv948738	chr15:93070742-93728147	Strong transcription Weak transcription Flanking Active TSS Enhancers Genic enhancers Active TSS Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	169 gene(s)	inside rSNPs	diseases
3	nsv1049490	chr15:93134405-93591660	Enhancers Genic enhancers Weak transcription Strong transcription Active TSS ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	151 gene(s)	inside rSNPs	diseases
4	nsv530846	chr15:93323949-94030462	Active TSS Strong transcription Flanking Active TSS Enhancers Weak transcription Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	153 gene(s)	inside rSNPs	diseases
5	nsv948881	chr15:93383740-93603608	Genic enhancers Strong transcription Weak transcription Transcr. at gene 5' and 3' Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	91 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:27 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:93390600-93399000	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
2	chr15:93393000-93399000	Weak transcription	Rectal Mucosa Donor 29	rectum
3	chr15:93396000-93396800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
4	chr15:93396000-93397000	Enhancers	Primary B cells from cord blood	blood
5	chr15:93396000-93397000	Enhancers	Primary T cells fromperipheralblood	blood
6	chr15:93396000-93397000	Enhancers	Primary hematopoietic stem cells short term culture	blood
7	chr15:93396000-93397000	Enhancers	Primary T helper cells PMA-I stimulated	--
8	chr15:93396000-93397000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
9	chr15:93396000-93397400	Enhancers	Primary B cells from peripheral blood	blood
10	chr15:93396000-93397400	Enhancers	Primary T killer memory cells from peripheral blood	blood
11	chr15:93396000-93397600	Enhancers	Primary monocytes fromperipheralblood	blood
12	chr15:93396200-93396800	Enhancers	Primary T cells from cord blood	blood
13	chr15:93396200-93397000	Enhancers	Primary T killer naive cells fromperipheralblood	blood
14	chr15:93396200-93397400	Enhancers	Primary T helper cells fromperipheralblood	blood
15	chr15:93396200-93397600	Enhancers	Primary T helper naive cells from peripheral blood	blood
16	chr15:93396200-93397600	Enhancers	Primary T helper naive cells fromperipheralblood	blood
17	chr15:93396200-93398000	Enhancers	Monocytes-CD14+_RO01746	blood
18	chr15:93396400-93396800	Enhancers	Fetal Thymus	thymus
19	chr15:93396400-93397000	Enhancers	Primary hematopoietic stem cells	blood
20	chr15:93396400-93399000	Weak transcription	A549	lung
21	chr15:93396600-93396800	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
22	chr15:93396600-93396800	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
23	chr15:93396600-93396800	Enhancers	Skeletal Muscle Female	skeletal muscle
24	chr15:93396600-93397000	Enhancers	H9 Cell Line	embryonic stem cell
25	chr15:93396600-93397000	Enhancers	iPS-20b Cell Line	embryonic stem cell
26	chr15:93396600-93397000	Flanking Active TSS	GM12878-XiMat	blood
27	chr15:93396600-93397600	Enhancers	Spleen	Spleen

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links