Variant report

Variant	rs60298190
Chromosome Location	chr1:94537009-94537010
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr1:94532251..94537168-chr1:94582958..94586481,4	MCF-7	breast:

Extended variants
information (count: 8 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs12758774	0.92[EUR][1000 genomes]
rs12759306	0.98[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1334895	0.92[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17110991	1.00[ASN][1000 genomes]
rs1931574	0.92[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28715983	0.88[ASN][1000 genomes]
rs57484952	0.88[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv871057	chr1:94513142-94577286	ZNF genes & repeats Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:52 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:94530000-94537600	Weak transcription	Fetal Heart	heart
2	chr1:94531400-94539200	Enhancers	HUVEC	blood vessel
3	chr1:94532000-94538600	Enhancers	Fetal Thymus	thymus
4	chr1:94533000-94539600	Enhancers	Fetal Adrenal Gland	Adrenal Gland
5	chr1:94533200-94539600	Enhancers	Thymus	Thymus
6	chr1:94533600-94537400	Enhancers	Fetal Muscle Leg	muscle
7	chr1:94533600-94539600	Enhancers	Pancreas	Pancrea
8	chr1:94534000-94538800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
9	chr1:94534000-94539800	Enhancers	Rectal Smooth Muscle	rectum
10	chr1:94534200-94539200	Enhancers	Fetal Stomach	stomach
11	chr1:94534800-94537200	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
12	chr1:94534800-94537400	Weak transcription	Fetal Brain Female	brain
13	chr1:94535000-94544200	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
14	chr1:94535200-94537400	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
15	chr1:94535200-94543800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
16	chr1:94535400-94538200	Weak transcription	Primary hematopoietic stem cells short term culture	blood
17	chr1:94535800-94537600	Weak transcription	Cortex derived primary cultured neurospheres	brain
18	chr1:94535800-94537800	Weak transcription	Primary T cells from cord blood	blood
19	chr1:94535800-94538200	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
20	chr1:94535800-94538200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
21	chr1:94535800-94547000	Weak transcription	NHDF-Ad	bronchial
22	chr1:94536000-94537200	Weak transcription	Fetal Lung	lung
23	chr1:94536000-94537200	Weak transcription	Dnd41	blood
24	chr1:94536000-94537600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
25	chr1:94536000-94538400	Weak transcription	Skeletal Muscle Female	skeletal muscle
26	chr1:94536000-94538600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
27	chr1:94536000-94538600	Weak transcription	Brain Substantia Nigra	brain
28	chr1:94536000-94538600	Weak transcription	HepG2	liver
29	chr1:94536000-94538800	Weak transcription	Right Ventricle	heart
30	chr1:94536200-94537200	Weak transcription	Skeletal Muscle Male	skeletal muscle
31	chr1:94536200-94537600	Weak transcription	Primary hematopoietic stem cells	blood
32	chr1:94536200-94538200	Weak transcription	Duodenum Smooth Muscle	Duodenum
33	chr1:94536400-94537200	Weak transcription	Brain Germinal Matrix	brain
34	chr1:94536400-94537800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
35	chr1:94536400-94538200	Weak transcription	Fetal Intestine Small	intestine
36	chr1:94536400-94538400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
37	chr1:94536400-94538400	Weak transcription	Fetal Muscle Trunk	muscle
38	chr1:94536400-94538400	Weak transcription	Placenta	Placenta
39	chr1:94536400-94538400	Weak transcription	Psoas Muscle	Psoas
40	chr1:94536400-94538800	Weak transcription	Esophagus	oesophagus
41	chr1:94536400-94539200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
42	chr1:94536400-94539400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
43	chr1:94536400-94542200	Weak transcription	Stomach Mucosa	stomach
44	chr1:94536400-94556400	Weak transcription	Right Atrium	heart
45	chr1:94536600-94538400	Weak transcription	Adipose Nuclei	Adipose
46	chr1:94536600-94538400	Weak transcription	Left Ventricle	heart
47	chr1:94536600-94544600	Weak transcription	Lung	lung
48	chr1:94536800-94537200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
49	chr1:94536800-94537200	Weak transcription	Gastric	stomach
50	chr1:94536800-94537200	Weak transcription	Spleen	Spleen

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links