Variant report

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr20:40782305..40784731-chr20:40788079..40790643,2	MCF-7	breast:
2	chr20:40779654..40781499-chr20:40781607..40783482,2	MCF-7	breast:

rSNPs within LD-proxies of this variant (count:35)

rs_ID	r²[population]
rs1883376	0.82[EUR][1000 genomes]
rs1883377	0.81[EUR][1000 genomes]
rs2143632	0.86[MEX][hapmap]
rs2223426	0.82[EUR][1000 genomes]
rs2867061	0.90[CHB][hapmap]
rs2867062	0.90[CHB][hapmap]
rs2867063	0.82[EUR][1000 genomes]
rs2903465	0.80[EUR][1000 genomes]
rs6016705	0.80[EUR][1000 genomes]
rs6016706	0.80[EUR][1000 genomes]
rs6016707	0.82[EUR][1000 genomes]
rs6016708	0.82[EUR][1000 genomes]
rs6016709	0.82[EUR][1000 genomes]
rs6016710	0.82[EUR][1000 genomes]
rs6016711	0.80[EUR][1000 genomes]
rs6030018	0.83[EUR][1000 genomes]
rs6030023	0.82[EUR][1000 genomes]
rs6030026	0.82[EUR][1000 genomes]
rs6030027	0.81[EUR][1000 genomes]
rs6030029	0.82[EUR][1000 genomes]
rs6030035	0.80[EUR][1000 genomes]
rs6030061	0.80[TSI][hapmap]
rs6030100	0.80[CHB][hapmap]
rs6093584	0.81[EUR][1000 genomes]
rs6093588	0.81[EUR][1000 genomes]
rs6093589	0.80[EUR][1000 genomes]
rs6102704	0.80[EUR][1000 genomes]
rs6102713	0.81[EUR][1000 genomes]
rs6102714	0.81[EUR][1000 genomes]
rs6124427	0.82[EUR][1000 genomes]
rs6130062	0.90[CHB][hapmap];0.86[MEX][hapmap];0.80[TSI][hapmap];0.83[EUR][1000 genomes]
rs6130068	0.82[EUR][1000 genomes]
rs6130071	0.81[EUR][1000 genomes]
rs728373	0.81[CHB][hapmap]
rs742290	0.80[TSI][hapmap]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2751913	chr20:40422982-41269321	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	22 gene(s)	inside rSNPs	diseases
2	nsv532516	chr20:40451059-41097155	Weak transcription Strong transcription Enhancers Bivalent Enhancer Active TSS ZNF genes & repeats Flanking Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
3	esv3500621	chr20:40783067-40787674	Weak transcription Enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases
4	esv3500622	chr20:40783067-40787674	Weak transcription Enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs6030011	CTNNBL1	cis	cerebellum	SCAN

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr20:40773800-40783800	Weak transcription	Breast Myoepithelial Primary Cells	Breast

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