Variant report

Variant	rs6030101
Chromosome Location	chr20:40896302-40896303
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 50 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:48)

rs_ID	r²[population]
rs11907769	0.88[ASN][1000 genomes]
rs16986670	0.89[ASN][1000 genomes]
rs1883378	0.87[AMR][1000 genomes]
rs1984399	0.82[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2143008	0.88[AMR][1000 genomes]
rs2179336	0.85[AMR][1000 genomes]
rs2206168	0.81[AMR][1000 genomes]
rs2206169	0.86[AMR][1000 genomes]
rs2223425	0.86[AMR][1000 genomes]
rs4140521	0.82[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs4331574	0.82[AMR][1000 genomes]
rs4375930	0.81[ASN][1000 genomes]
rs4425144	0.87[AMR][1000 genomes]
rs6016716	0.87[AMR][1000 genomes]
rs6016722	0.84[ASN][1000 genomes]
rs6016726	0.84[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs6030033	0.86[AMR][1000 genomes]
rs6030056	0.88[AMR][1000 genomes]
rs6030058	0.87[ASN][1000 genomes]
rs6030069	0.85[AMR][1000 genomes];0.80[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs6030070	0.82[EUR][1000 genomes]
rs6030071	0.82[EUR][1000 genomes]
rs6030072	0.84[ASN][1000 genomes]
rs6030076	0.81[EUR][1000 genomes]
rs6030081	0.82[AMR][1000 genomes]
rs6030082	0.81[EUR][1000 genomes]
rs6030083	0.81[EUR][1000 genomes]
rs6030084	0.92[ASN][1000 genomes]
rs6030085	0.82[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs6030087	0.81[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs6030088	0.82[EUR][1000 genomes]
rs6030089	0.82[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs6030096	0.87[AFR][1000 genomes];0.89[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs6030100	0.92[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs6065450	0.80[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs6065451	0.96[AFR][1000 genomes];0.90[AMR][1000 genomes];0.83[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs6072651	0.86[AMR][1000 genomes]
rs6072672	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs6093595	0.81[ASN][1000 genomes]
rs6093598	0.84[ASN][1000 genomes]
rs6124435	0.83[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs6130091	0.83[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs6513772	0.82[ASN][1000 genomes]
rs727336	0.83[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs728373	0.86[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs728374	0.88[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs926647	0.86[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs932358	0.86[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2751913	chr20:40422982-41269321	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	22 gene(s)	inside rSNPs	diseases
2	nsv532516	chr20:40451059-41097155	Weak transcription Strong transcription Enhancers Bivalent Enhancer Active TSS ZNF genes & repeats Flanking Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr20:40885400-40902800	Weak transcription	Breast Myoepithelial Primary Cells	Breast
2	chr20:40885800-40896800	Weak transcription	Cortex derived primary cultured neurospheres	brain
3	chr20:40893200-40901200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
4	chr20:40896000-40896600	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links